Gene annotation
Transcriptome id Sobic.001G006000.1
Synonym Sb01g000640
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5WRY5
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF357
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46580 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os03g63910.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009105
Brachypodium KQK12014
Barley HORVU5Hr1G124070.7 , HORVU5Hr1G124070.6 , HORVU5Hr1G124070.5 , HORVU5Hr1G124070.4 , HORVU5Hr1G124070.3 , HORVU5Hr1G124070.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
2 Sobic.009G028400 expressed protein -
3 Sobic.004G253400 tic20 protein-related, putative, expressed -
4 Sobic.008G063200 expressed protein -
5 Sobic.007G076900 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
6 Sobic.004G179200 expressed protein -
7 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
8 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
9 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
10 Sobic.005G021600 expressed protein -
11 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
12 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
13 Sobic.003G342200 dihydroflavonol-4-reductase, putative, expressed -
14 Sobic.006G125000 expressed protein -
15 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
16 Sobic.006G214700 APO, putative, expressed -
17 Sobic.001G455500 pentatricopeptide repeat domain containing protein, putative, expressed -
18 Sobic.007G132500 F-box domain containing protein, expressed -
19 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
20 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G006000 Sobic001G006000 Sobic010G076800 Sobic010G076800 Sobic001G006000--Sobic010G076800 Sobic009G028400 Sobic009G028400 Sobic001G006000--Sobic009G028400 Sobic004G253400 Sobic004G253400 Sobic001G006000--Sobic004G253400 Sobic008G063200 Sobic008G063200 Sobic001G006000--Sobic008G063200 Sobic007G076900 Sobic007G076900 Sobic001G006000--Sobic007G076900 Sobic004G179200 Sobic004G179200 Sobic001G006000--Sobic004G179200 Sobic001G339100 Sobic001G339100 Sobic001G006000--Sobic001G339100 Sobic003G253300 Sobic003G253300 Sobic001G006000--Sobic003G253300 Sobic003G245800 Sobic003G245800 Sobic001G006000--Sobic003G245800 Sobic002G331800 Sobic002G331800 Sobic010G076800--Sobic002G331800 Sobic010G076800--Sobic001G006000 Sobic010G076800--Sobic007G076900 Sobic006G214700 Sobic006G214700 Sobic010G076800--Sobic006G214700 Sobic010G076800--Sobic008G063200 Sobic010G076800--Sobic003G253300 Sobic006G193200 Sobic006G193200 Sobic010G076800--Sobic006G193200 Sobic003G037300 Sobic003G037300 Sobic010G076800--Sobic003G037300 Sobic003G179400 Sobic003G179400 Sobic010G076800--Sobic003G179400 Sobic009G028400--Sobic001G006000 Sobic009G028400--Sobic001G339100 Sobic006G111600 Sobic006G111600 Sobic009G028400--Sobic006G111600 Sobic005G021600 Sobic005G021600 Sobic009G028400--Sobic005G021600 Sobic003G221700 Sobic003G221700 Sobic009G028400--Sobic003G221700 Sobic003G330100 Sobic003G330100 Sobic009G028400--Sobic003G330100 Sobic007G178500 Sobic007G178500 Sobic009G028400--Sobic007G178500 Sobic009G028400--Sobic004G179200 Sobic003G310100 Sobic003G310100 Sobic009G028400--Sobic003G310100 Sobic004G253400--Sobic001G006000 Sobic001G175700 Sobic001G175700 Sobic004G253400--Sobic001G175700 Sobic006G125000 Sobic006G125000 Sobic004G253400--Sobic006G125000 Sobic003G342200 Sobic003G342200 Sobic004G253400--Sobic003G342200 Sobic004G253400--Sobic003G253300 Sobic003G378600 Sobic003G378600 Sobic004G253400--Sobic003G378600 Sobic004G253400--Sobic004G179200 Sobic004G012900 Sobic004G012900 Sobic004G253400--Sobic004G012900 Sobic006G110900 Sobic006G110900 Sobic004G253400--Sobic006G110900 Sobic001G450600 Sobic001G450600 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic008G063200--Sobic010G076800 Sobic004G333400 Sobic004G333400 Sobic008G063200--Sobic004G333400 Sobic008G063200--Sobic003G342200 Sobic007G076900--Sobic010G076800 Sobic007G076900--Sobic001G006000 Sobic007G076900--Sobic008G063200 Sobic005G111500 Sobic005G111500 Sobic007G076900--Sobic005G111500 Sobic007G076900--Sobic003G179400 Sobic007G076900--Sobic009G028400 Sobic009G062500 Sobic009G062500 Sobic007G076900--Sobic009G062500 Sobic001G525900 Sobic001G525900 Sobic007G076900--Sobic001G525900 Sobic007G076900--Sobic001G339100 Sobic002G131700 Sobic002G131700 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic002G297400 Sobic002G297400 Sobic004G179200--Sobic002G297400 Sobic001G469933 Sobic001G469933 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic009G234200 Sobic009G234200 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100 Sobic001G339100--Sobic009G028400 Sobic007G023300 Sobic007G023300 Sobic001G339100--Sobic007G023300 Sobic001G407900 Sobic001G407900 Sobic001G339100--Sobic001G407900 Sobic001G339100--Sobic001G006000 Sobic001G339100--Sobic007G178500 Sobic001G339100--Sobic005G021600 Sobic008G063500 Sobic008G063500 Sobic001G339100--Sobic008G063500 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic003G253300--Sobic003G342200 Sobic003G253300--Sobic006G110900 Sobic006G155500 Sobic006G155500 Sobic003G253300--Sobic006G155500 Sobic006G050400 Sobic006G050400 Sobic003G253300--Sobic006G050400 Sobic003G253300--Sobic006G214700 Sobic003G284800 Sobic003G284800 Sobic003G253300--Sobic003G284800 Sobic003G253300--Sobic008G063200 Sobic001G118400 Sobic001G118400 Sobic003G253300--Sobic001G118400 Sobic003G253300--Sobic010G076800 Sobic003G245800--Sobic006G197700 Sobic002G345200 Sobic002G345200 Sobic003G245800--Sobic002G345200 Sobic004G250200 Sobic004G250200 Sobic003G245800--Sobic004G250200 Sobic010G183400 Sobic010G183400 Sobic003G245800--Sobic010G183400 Sobic003G439600 Sobic003G439600 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100
Octagon: transcription factors


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