Gene annotation
Transcriptome id Sobic.003G179400.1
Synonym Sb03g023470
Functional annotation NLI interacting factor(NIF) family protein (PubMedID : 26320239)
NLI interacting factor-like phosphatase, putative, expressed
UniProt C5XM94
Pfam PF03031
Panther DB PTHR12210
NCBI CDD -
KEGG Orthology K15731; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45700 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os05g11570.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a037110
Brachypodium KQK07071
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G214700 APO, putative, expressed -
2 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
3 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
4 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
5 Sobic.004G333400 COBW domain containing protein, putative, expressed -
6 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
7 Sobic.008G063200 expressed protein -
8 Sobic.002G331800 PPR repeat containing protein, expressed -
9 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
10 Sobic.006G193200 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
11 Sobic.003G334100 zinc finger family protein, putative, expressed -
12 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
13 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
14 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
15 Sobic.004G248400 APO, putative, expressed -
16 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
17 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
18 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
19 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
20 Sobic.009G141400 transcriptional regulator, putative, expressed -


Gene co-expression network
sample Sobic003G179400 Sobic003G179400 Sobic006G214700 Sobic006G214700 Sobic003G179400--Sobic006G214700 Sobic010G231100 Sobic010G231100 Sobic003G179400--Sobic010G231100 Sobic005G028900 Sobic005G028900 Sobic003G179400--Sobic005G028900 Sobic010G076800 Sobic010G076800 Sobic003G179400--Sobic010G076800 Sobic004G333400 Sobic004G333400 Sobic003G179400--Sobic004G333400 Sobic001G450600 Sobic001G450600 Sobic003G179400--Sobic001G450600 Sobic008G063200 Sobic008G063200 Sobic003G179400--Sobic008G063200 Sobic002G331800 Sobic002G331800 Sobic003G179400--Sobic002G331800 Sobic006G110900 Sobic006G110900 Sobic003G179400--Sobic006G110900 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic006G214700--Sobic005G028900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic006G214700--Sobic010G076800 Sobic010G231100--Sobic003G179400 Sobic001G207200 Sobic001G207200 Sobic010G231100--Sobic001G207200 Sobic010G231100--Sobic006G214700 Sobic010G231100--Sobic005G028900 Sobic009G036300 Sobic009G036300 Sobic010G231100--Sobic009G036300 Sobic009G079950 Sobic009G079950 Sobic010G231100--Sobic009G079950 Sobic009G141400 Sobic009G141400 Sobic010G231100--Sobic009G141400 Sobic006G024500 Sobic006G024500 Sobic010G231100--Sobic006G024500 Sobic010G231100--Sobic001G450600 Sobic005G028900--Sobic006G214700 Sobic004G144000 Sobic004G144000 Sobic005G028900--Sobic004G144000 Sobic010G183400 Sobic010G183400 Sobic005G028900--Sobic010G183400 Sobic004G250200 Sobic004G250200 Sobic005G028900--Sobic004G250200 Sobic003G439600 Sobic003G439600 Sobic005G028900--Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic005G028900--Sobic003G245800 Sobic005G028900--Sobic003G179400 Sobic007G227600 Sobic007G227600 Sobic005G028900--Sobic007G227600 Sobic005G028900--Sobic004G333400 Sobic010G076800--Sobic002G331800 Sobic001G006000 Sobic001G006000 Sobic010G076800--Sobic001G006000 Sobic007G076900 Sobic007G076900 Sobic010G076800--Sobic007G076900 Sobic010G076800--Sobic006G214700 Sobic010G076800--Sobic008G063200 Sobic010G076800--Sobic003G253300 Sobic006G193200 Sobic006G193200 Sobic010G076800--Sobic006G193200 Sobic003G037300 Sobic003G037300 Sobic010G076800--Sobic003G037300 Sobic010G076800--Sobic003G179400 Sobic003G334100 Sobic003G334100 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic002G331800--Sobic010G076800 Sobic002G331800--Sobic006G214700 Sobic002G331800--Sobic003G439600 Sobic002G331800--Sobic004G333400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic002G331800--Sobic003G245800 Sobic006G110900--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic006G110900--Sobic001G286600 Sobic006G155500 Sobic006G155500 Sobic006G110900--Sobic006G155500 Sobic006G110900--Sobic006G214700 Sobic006G110900--Sobic008G063200 Sobic006G110900--Sobic001G118400 Sobic004G224500 Sobic004G224500 Sobic006G110900--Sobic004G224500 Sobic003G328100 Sobic003G328100 Sobic006G110900--Sobic003G328100 Sobic006G050400 Sobic006G050400 Sobic006G110900--Sobic006G050400
Octagon: transcription factors


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