Gene annotation
Transcriptome id Sobic.004G224500.1,Sobic.004G224500.2
Synonym NCLPP7, CLPP2, Sb04g026880
Functional annotation OsClp3 - Putative Clp protease homologue, expressed
UniProt C5XY66
Pfam PF00574
Panther DB PTHR10381 PTHR10381:SF21
NCBI CDD KOG0840; ATP-dependent Clp protease, proteolytic subunit
KEGG Orthology K01358; clpP, ATP-dependent Clp protease, protease subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23140 : nuclear-encoded CLP protease P7
RAP-DB (Rice) LOC_Os02g42290.3 : OsClp3 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a032079 , Zm00025a021041 , Zm00025a056540 , Zm00025a010608
Brachypodium KQK00461 , KQK00460 , KQJ83676
Barley HORVU2Hr1G090470.1 , HORVU6Hr1G059510.12 , HORVU6Hr1G059510.13 , HORVU6Hr1G059510.10 , HORVU6Hr1G059510.11 , HORVU6Hr1G059510.3 , HORVU6Hr1G059510.4 , HORVU6Hr1G059510.5 , HORVU6Hr1G059510.6 , HORVU6Hr1G059510.7 , HORVU6Hr1G059510.8 , HORVU6Hr1G059510.9 , HORVU2Hr1G090470.2 , HORVU2Hr1G090470.3
Wheat -
Populus -


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cDNA sequences
Sobic.004G224500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
2 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
3 Sobic.005G021600 expressed protein -
4 Sobic.006G214700 APO, putative, expressed -
5 Sobic.001G525900 homeobox domain containing protein, expressed -
6 Sobic.008G063200 expressed protein -
7 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
8 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
9 Sobic.001G314900 homeobox domain containing protein, expressed -
10 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
11 Sobic.005G203300 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
12 Sobic.002G142066 - K18045: SIW14, tyrosine-protein phosphatase SIW14
13 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
14 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
15 Sobic.010G193000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
17 Sobic.009G141400 transcriptional regulator, putative, expressed -
18 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
19 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
20 Sobic.007G076900 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase


Gene co-expression network
sample Sobic004G224500 Sobic004G224500 Sobic006G110900 Sobic006G110900 Sobic004G224500--Sobic006G110900 Sobic002G046900 Sobic002G046900 Sobic004G224500--Sobic002G046900 Sobic005G021600 Sobic005G021600 Sobic004G224500--Sobic005G021600 Sobic006G214700 Sobic006G214700 Sobic004G224500--Sobic006G214700 Sobic001G525900 Sobic001G525900 Sobic004G224500--Sobic001G525900 Sobic008G063200 Sobic008G063200 Sobic004G224500--Sobic008G063200 Sobic003G179400 Sobic003G179400 Sobic004G224500--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic004G224500--Sobic001G006000 Sobic001G314900 Sobic001G314900 Sobic004G224500--Sobic001G314900 Sobic003G253300 Sobic003G253300 Sobic006G110900--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic006G110900--Sobic001G286600 Sobic006G155500 Sobic006G155500 Sobic006G110900--Sobic006G155500 Sobic006G110900--Sobic006G214700 Sobic006G110900--Sobic008G063200 Sobic001G118400 Sobic001G118400 Sobic006G110900--Sobic001G118400 Sobic006G110900--Sobic004G224500 Sobic003G328100 Sobic003G328100 Sobic006G110900--Sobic003G328100 Sobic006G050400 Sobic006G050400 Sobic006G110900--Sobic006G050400 Sobic006G201100 Sobic006G201100 Sobic002G046900--Sobic006G201100 Sobic005G175600 Sobic005G175600 Sobic002G046900--Sobic005G175600 Sobic010G035500 Sobic010G035500 Sobic002G046900--Sobic010G035500 Sobic002G046900--Sobic006G110900 Sobic002G046900--Sobic004G224500 Sobic006G123500 Sobic006G123500 Sobic002G046900--Sobic006G123500 Sobic010G207500 Sobic010G207500 Sobic002G046900--Sobic010G207500 Sobic001G404500 Sobic001G404500 Sobic002G046900--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic002G046900--Sobic005G203300 Sobic008G063100 Sobic008G063100 Sobic005G021600--Sobic008G063100 Sobic010G265500 Sobic010G265500 Sobic005G021600--Sobic010G265500 Sobic009G028400 Sobic009G028400 Sobic005G021600--Sobic009G028400 Sobic002G195700 Sobic002G195700 Sobic005G021600--Sobic002G195700 Sobic007G178500 Sobic007G178500 Sobic005G021600--Sobic007G178500 Sobic010G218600 Sobic010G218600 Sobic005G021600--Sobic010G218600 Sobic002G281000 Sobic002G281000 Sobic005G021600--Sobic002G281000 Sobic007G132500 Sobic007G132500 Sobic005G021600--Sobic007G132500 Sobic005G021600--Sobic001G006000 Sobic006G214700--Sobic003G179400 Sobic001G450600 Sobic001G450600 Sobic006G214700--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G214700--Sobic006G110900 Sobic004G333400 Sobic004G333400 Sobic006G214700--Sobic004G333400 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic001G525900--Sobic002G281000 Sobic001G525900--Sobic001G404500 Sobic001G019300 Sobic001G019300 Sobic001G525900--Sobic001G019300 Sobic001G525900--Sobic005G021600 Sobic006G164300 Sobic006G164300 Sobic001G525900--Sobic006G164300 Sobic001G048000 Sobic001G048000 Sobic001G525900--Sobic001G048000 Sobic001G525900--Sobic008G063100 Sobic004G063200 Sobic004G063200 Sobic001G525900--Sobic004G063200 Sobic001G321600 Sobic001G321600 Sobic001G525900--Sobic001G321600 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic003G179400--Sobic006G214700 Sobic010G231100 Sobic010G231100 Sobic003G179400--Sobic010G231100 Sobic003G179400--Sobic005G028900 Sobic003G179400--Sobic010G076800 Sobic003G179400--Sobic004G333400 Sobic003G179400--Sobic001G450600 Sobic003G179400--Sobic008G063200 Sobic003G179400--Sobic002G331800 Sobic003G179400--Sobic006G110900 Sobic001G006000--Sobic010G076800 Sobic001G006000--Sobic009G028400 Sobic004G253400 Sobic004G253400 Sobic001G006000--Sobic004G253400 Sobic001G006000--Sobic008G063200 Sobic007G076900 Sobic007G076900 Sobic001G006000--Sobic007G076900 Sobic004G179200 Sobic004G179200 Sobic001G006000--Sobic004G179200 Sobic001G339100 Sobic001G339100 Sobic001G006000--Sobic001G339100 Sobic001G006000--Sobic003G253300 Sobic003G245800 Sobic003G245800 Sobic001G006000--Sobic003G245800 Sobic001G314900--Sobic001G404500 Sobic001G314900--Sobic004G224500 Sobic006G258700 Sobic006G258700 Sobic001G314900--Sobic006G258700 Sobic001G314900--Sobic001G525900 Sobic010G269400 Sobic010G269400 Sobic001G314900--Sobic010G269400 Sobic006G131800 Sobic006G131800 Sobic001G314900--Sobic006G131800 Sobic010G193000 Sobic010G193000 Sobic001G314900--Sobic010G193000 Sobic002G257100 Sobic002G257100 Sobic001G314900--Sobic002G257100 Sobic004G201700 Sobic004G201700 Sobic001G314900--Sobic004G201700
Octagon: transcription factors


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