Gene annotation
Transcriptome id Sobic.001G314900.10,Sobic.001G314900.3,Sobic.001G314900.5,Sobic.001G314900.6,Sobic.001G314900.1,Sobic.001G314900.7,Sobic.001G314900.8,Sobic.001G314900.2,Sobic.001G314900.4,Sobic.001G314900.9
Synonym SAW2, BLH4, Sb01g030620
Functional annotation homeobox domain containing protein, expressed
UniProt A0A1Z5S8K3 , C5WUF2 , A0A1Z5S8I1 , A0A1Z5S8J0
Pfam PF05920 PF07526
Panther DB PTHR11850 PTHR11850:SF96
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G23760 : POX (plant homeobox) family protein,BEL1-like homeodomain 4
RAP-DB (Rice) LOC_Os10g39030.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003145
Brachypodium PNT64144 , PNT64143 , KQJ89348 , KQJ89347 , KQJ92158 , KQJ97586 , KQK23477
Barley HORVU4Hr1G020710.4 , HORVU4Hr1G020710.5 , HORVU4Hr1G020710.6 , HORVU4Hr1G020710.7 , HORVU4Hr1G020710.1 , HORVU4Hr1G020710.2 , HORVU4Hr1G020710.3 , HORVU1Hr1G049760.11 , HORVU4Hr1G074250.1 , HORVU1Hr1G049760.12 , HORVU1Hr1G049760.9 , HORVU1Hr1G049760.8 , HORVU1Hr1G049760.1 , HORVU1Hr1G049760.3 , HORVU1Hr1G049760.2 , HORVU1Hr1G049760.5 , HORVU1Hr1G049760.4 , HORVU1Hr1G049760.7 , HORVU1Hr1G049760.6
Wheat TraesCS4D02G340700 , TraesCS4D02G111900 , TraesCS4A02G200800 , TraesCS4B02G114600 , TraesCS1B02G191800 , TraesCS1A02G183400 , TraesCS1D02G193800
Populus -


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cDNA sequences
Sobic.001G314900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
2 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
4 Sobic.001G525900 homeobox domain containing protein, expressed -
5 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
6 Sobic.006G131800 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
7 Sobic.010G193000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.002G257100 regulatory protein, putative, expressed -
9 Sobic.004G201700 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
10 Sobic.004G268500 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
11 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
12 Sobic.008G063200 expressed protein -
13 Sobic.005G072200 lipase, putative, expressed -
14 Sobic.008G065200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor protein kinase, putative, expressed -
15 Sobic.001G351400 Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed -
16 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
17 Sobic.007G076900 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
18 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
19 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
20 Sobic.003G292600 HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed K14490: histidine-containing phosphotransfer peotein


Gene co-expression network
sample Sobic001G314900 Sobic001G314900 Sobic001G404500 Sobic001G404500 Sobic001G314900--Sobic001G404500 Sobic004G224500 Sobic004G224500 Sobic001G314900--Sobic004G224500 Sobic006G258700 Sobic006G258700 Sobic001G314900--Sobic006G258700 Sobic001G525900 Sobic001G525900 Sobic001G314900--Sobic001G525900 Sobic010G269400 Sobic010G269400 Sobic001G314900--Sobic010G269400 Sobic006G131800 Sobic006G131800 Sobic001G314900--Sobic006G131800 Sobic010G193000 Sobic010G193000 Sobic001G314900--Sobic010G193000 Sobic002G257100 Sobic002G257100 Sobic001G314900--Sobic002G257100 Sobic004G201700 Sobic004G201700 Sobic001G314900--Sobic004G201700 Sobic006G123500 Sobic006G123500 Sobic001G404500--Sobic006G123500 Sobic004G063200 Sobic004G063200 Sobic001G404500--Sobic004G063200 Sobic002G281000 Sobic002G281000 Sobic001G404500--Sobic002G281000 Sobic008G063100 Sobic008G063100 Sobic001G404500--Sobic008G063100 Sobic001G404500--Sobic001G525900 Sobic003G410900 Sobic003G410900 Sobic001G404500--Sobic003G410900 Sobic004G268500 Sobic004G268500 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic004G099700 Sobic004G099700 Sobic001G404500--Sobic004G099700 Sobic006G110900 Sobic006G110900 Sobic004G224500--Sobic006G110900 Sobic002G046900 Sobic002G046900 Sobic004G224500--Sobic002G046900 Sobic005G021600 Sobic005G021600 Sobic004G224500--Sobic005G021600 Sobic006G214700 Sobic006G214700 Sobic004G224500--Sobic006G214700 Sobic004G224500--Sobic001G525900 Sobic008G063200 Sobic008G063200 Sobic004G224500--Sobic008G063200 Sobic003G179400 Sobic003G179400 Sobic004G224500--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic004G224500--Sobic001G006000 Sobic004G224500--Sobic001G314900 Sobic003G014300 Sobic003G014300 Sobic006G258700--Sobic003G014300 Sobic006G258700--Sobic010G269400 Sobic004G298900 Sobic004G298900 Sobic006G258700--Sobic004G298900 Sobic001G351400 Sobic001G351400 Sobic006G258700--Sobic001G351400 Sobic003G037300 Sobic003G037300 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic001G286600 Sobic001G286600 Sobic006G258700--Sobic001G286600 Sobic006G258700--Sobic001G404500 Sobic001G525900--Sobic002G281000 Sobic001G525900--Sobic001G404500 Sobic001G019300 Sobic001G019300 Sobic001G525900--Sobic001G019300 Sobic001G525900--Sobic005G021600 Sobic006G164300 Sobic006G164300 Sobic001G525900--Sobic006G164300 Sobic001G048000 Sobic001G048000 Sobic001G525900--Sobic001G048000 Sobic001G525900--Sobic008G063100 Sobic001G525900--Sobic004G063200 Sobic001G321600 Sobic001G321600 Sobic001G525900--Sobic001G321600 Sobic010G269400--Sobic001G286600 Sobic010G269400--Sobic006G258700 Sobic010G140600 Sobic010G140600 Sobic010G269400--Sobic010G140600 Sobic010G058200 Sobic010G058200 Sobic010G269400--Sobic010G058200 Sobic010G269400--Sobic003G037300 Sobic010G269400--Sobic003G014300 Sobic002G102200 Sobic002G102200 Sobic010G269400--Sobic002G102200 Sobic010G269400--Sobic006G110900 Sobic009G062400 Sobic009G062400 Sobic010G269400--Sobic009G062400 Sobic006G131800--Sobic002G281000 Sobic006G131800--Sobic001G404500 Sobic003G291400 Sobic003G291400 Sobic006G131800--Sobic003G291400 Sobic006G131800--Sobic001G314900 Sobic006G131800--Sobic008G063100 Sobic010G089200 Sobic010G089200 Sobic006G131800--Sobic010G089200 Sobic006G131800--Sobic001G525900 Sobic006G131800--Sobic004G224500 Sobic004G254000 Sobic004G254000 Sobic006G131800--Sobic004G254000 Sobic005G203300 Sobic005G203300 Sobic010G193000--Sobic005G203300 Sobic008G065200 Sobic008G065200 Sobic010G193000--Sobic008G065200 Sobic009G037200 Sobic009G037200 Sobic010G193000--Sobic009G037200 Sobic010G193000--Sobic002G257100 Sobic010G193000--Sobic004G224500 Sobic010G193000--Sobic004G099700 Sobic010G193000--Sobic001G404500 Sobic010G193000--Sobic001G314900 Sobic010G193000--Sobic002G046900 Sobic002G209100 Sobic002G209100 Sobic002G257100--Sobic002G209100 Sobic002G041800 Sobic002G041800 Sobic002G257100--Sobic002G041800 Sobic002G257100--Sobic001G321600 Sobic002G257100--Sobic010G089200 Sobic004G258400 Sobic004G258400 Sobic002G257100--Sobic004G258400 Sobic001G520100 Sobic001G520100 Sobic002G257100--Sobic001G520100 Sobic005G093300 Sobic005G093300 Sobic002G257100--Sobic005G093300 Sobic002G265400 Sobic002G265400 Sobic002G257100--Sobic002G265400 Sobic005G063900 Sobic005G063900 Sobic002G257100--Sobic005G063900 Sobic008G101400 Sobic008G101400 Sobic004G201700--Sobic008G101400 Sobic008G072700 Sobic008G072700 Sobic004G201700--Sobic008G072700 Sobic007G213700 Sobic007G213700 Sobic004G201700--Sobic007G213700 Sobic004G201700--Sobic006G258700 Sobic008G015100 Sobic008G015100 Sobic004G201700--Sobic008G015100 Sobic004G201700--Sobic004G224500 Sobic004G201700--Sobic003G037300 Sobic004G201700--Sobic001G314900 Sobic001G072700 Sobic001G072700 Sobic004G201700--Sobic001G072700
Octagon: transcription factors


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