Gene annotation
Transcriptome id Sobic.006G123500.1
Synonym PMSR2, Sb06g020380, ATMSRA2
Functional annotation peptide methionine sulfoxide reductase, putative, expressed
UniProt C5YAU0
Pfam PF01625
Panther DB PTHR10173 PTHR10173:SF39
NCBI CDD KOG1635; Peptide methionine sulfoxide reductase
KEGG Orthology K07304; peptide-methionine (S)-S-oxide reductase
Gene Ontology GO:0008113; peptide-methionine (S)-S-oxide reductase activity GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO:0006979response to oxidative stress


Orthologs (automatic annotation)
TAIR AT5G07460 : peptidemethionine sulfoxide reductase 2
RAP-DB (Rice) LOC_Os04g40620.1 : peptide methionine sulfoxide reductase, putative, expressed
MaizeGDB (Corn) Zm00025a010971
Brachypodium PNT61313 , PNT61312
Barley -
Wheat TraesCS2A02G323300 , TraesCS2D02G339600 , TraesCS2B02G359300
Populus -


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cDNA sequences
Sobic.006G123500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G268500 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
2 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
3 Sobic.004G099700 receptor-like protein kinase 5 precursor, putative, expressed -
4 Sobic.005G187900 TKL_IRAK_DUF26-lh.5 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.003G284800 heat shock protein DnaJ, putative, expressed -
6 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
7 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
8 Sobic.008G065200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor protein kinase, putative, expressed -
9 Sobic.002G001900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
10 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
11 Sobic.005G097800 eukaryotic aspartyl protease domain containing protein, expressed -
12 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
13 Sobic.006G055000 TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
14 Sobic.003G410900 CRAL/TRIO domain containing protein, expressed -
15 Sobic.002G362100 expressed protein -
16 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
18 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
19 Sobic.008G004700 NC domain-containing protein, putative, expressed -
20 Sobic.006G164300 YELLOW STRIPE like 2(PubMedID : 26465154)@- -


Gene co-expression network
sample Sobic006G123500 Sobic006G123500 Sobic004G268500 Sobic004G268500 Sobic006G123500--Sobic004G268500 Sobic001G404500 Sobic001G404500 Sobic006G123500--Sobic001G404500 Sobic004G099700 Sobic004G099700 Sobic006G123500--Sobic004G099700 Sobic005G187900 Sobic005G187900 Sobic006G123500--Sobic005G187900 Sobic003G284800 Sobic003G284800 Sobic006G123500--Sobic003G284800 Sobic002G046900 Sobic002G046900 Sobic006G123500--Sobic002G046900 Sobic004G063200 Sobic004G063200 Sobic006G123500--Sobic004G063200 Sobic008G065200 Sobic008G065200 Sobic006G123500--Sobic008G065200 Sobic002G001900 Sobic002G001900 Sobic006G123500--Sobic002G001900 Sobic004G268500--Sobic006G123500 Sobic004G268500--Sobic008G065200 Sobic004G268500--Sobic003G284800 Sobic004G268500--Sobic001G404500 Sobic001G071200 Sobic001G071200 Sobic004G268500--Sobic001G071200 Sobic003G292600 Sobic003G292600 Sobic004G268500--Sobic003G292600 Sobic004G268500--Sobic002G046900 Sobic002G025700 Sobic002G025700 Sobic004G268500--Sobic002G025700 Sobic002G362100 Sobic002G362100 Sobic004G268500--Sobic002G362100 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic002G281000 Sobic002G281000 Sobic001G404500--Sobic002G281000 Sobic008G063100 Sobic008G063100 Sobic001G404500--Sobic008G063100 Sobic001G525900 Sobic001G525900 Sobic001G404500--Sobic001G525900 Sobic003G410900 Sobic003G410900 Sobic001G404500--Sobic003G410900 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic001G404500--Sobic004G099700 Sobic004G099700--Sobic006G123500 Sobic004G099700--Sobic001G404500 Sobic007G025900 Sobic007G025900 Sobic004G099700--Sobic007G025900 Sobic008G060300 Sobic008G060300 Sobic004G099700--Sobic008G060300 Sobic004G099700--Sobic004G063200 Sobic004G099700--Sobic003G410900 Sobic004G099700--Sobic008G065200 Sobic006G164300 Sobic006G164300 Sobic004G099700--Sobic006G164300 Sobic010G193000 Sobic010G193000 Sobic004G099700--Sobic010G193000 Sobic005G187900--Sobic006G123500 Sobic006G055000 Sobic006G055000 Sobic005G187900--Sobic006G055000 Sobic005G187900--Sobic001G404500 Sobic005G187900--Sobic004G099700 Sobic005G097800 Sobic005G097800 Sobic005G187900--Sobic005G097800 Sobic002G211000 Sobic002G211000 Sobic005G187900--Sobic002G211000 Sobic010G225600 Sobic010G225600 Sobic005G187900--Sobic010G225600 Sobic001G317400 Sobic001G317400 Sobic005G187900--Sobic001G317400 Sobic005G187900--Sobic004G268500 Sobic002G112400 Sobic002G112400 Sobic003G284800--Sobic002G112400 Sobic009G062400 Sobic009G062400 Sobic003G284800--Sobic009G062400 Sobic003G253300 Sobic003G253300 Sobic003G284800--Sobic003G253300 Sobic006G265900 Sobic006G265900 Sobic003G284800--Sobic006G265900 Sobic002G061900 Sobic002G061900 Sobic003G284800--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic003G284800--Sobic006G097500 Sobic007G053800 Sobic007G053800 Sobic003G284800--Sobic007G053800 Sobic001G128600 Sobic001G128600 Sobic003G284800--Sobic001G128600 Sobic008G006100 Sobic008G006100 Sobic003G284800--Sobic008G006100 Sobic006G201100 Sobic006G201100 Sobic002G046900--Sobic006G201100 Sobic005G175600 Sobic005G175600 Sobic002G046900--Sobic005G175600 Sobic010G035500 Sobic010G035500 Sobic002G046900--Sobic010G035500 Sobic006G110900 Sobic006G110900 Sobic002G046900--Sobic006G110900 Sobic004G224500 Sobic004G224500 Sobic002G046900--Sobic004G224500 Sobic002G046900--Sobic006G123500 Sobic010G207500 Sobic010G207500 Sobic002G046900--Sobic010G207500 Sobic002G046900--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic002G046900--Sobic005G203300 Sobic002G265400 Sobic002G265400 Sobic004G063200--Sobic002G265400 Sobic004G063200--Sobic001G404500 Sobic004G063200--Sobic002G281000 Sobic006G060800 Sobic006G060800 Sobic004G063200--Sobic006G060800 Sobic004G063200--Sobic009G189000 Sobic001G198700 Sobic001G198700 Sobic004G063200--Sobic001G198700 Sobic004G063200--Sobic008G063100 Sobic001G019300 Sobic001G019300 Sobic004G063200--Sobic001G019300 Sobic004G063200--Sobic006G123500 Sobic008G065200--Sobic004G268500 Sobic008G065200--Sobic010G193000 Sobic008G065200--Sobic006G123500 Sobic008G065200--Sobic002G362100 Sobic008G065200--Sobic001G404500 Sobic008G065200--Sobic004G099700 Sobic006G258700 Sobic006G258700 Sobic008G065200--Sobic006G258700 Sobic003G255900 Sobic003G255900 Sobic008G065200--Sobic003G255900 Sobic003G014300 Sobic003G014300 Sobic008G065200--Sobic003G014300 Sobic002G001900--Sobic006G123500 Sobic002G001900--Sobic004G268500 Sobic003G223400 Sobic003G223400 Sobic002G001900--Sobic003G223400 Sobic001G314400 Sobic001G314400 Sobic002G001900--Sobic001G314400 Sobic002G001900--Sobic008G065200 Sobic009G045600 Sobic009G045600 Sobic002G001900--Sobic009G045600 Sobic002G001900--Sobic003G255900 Sobic002G001900--Sobic006G055000 Sobic002G001900--Sobic004G099700
Octagon: transcription factors


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