Gene annotation
Transcriptome id Sobic.006G164300.2,Sobic.006G164300.1
Synonym YSL3, ATYSL3, Sb06g024040
Functional annotation YELLOW STRIPE like 2 (PubMedID : 26465154)
-
UniProt A0A1B6PMB1 , A0A1B6PMB6
Pfam PF03169
Panther DB PTHR31645 PTHR31645:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53550 : YELLOW STRIPE like 3
RAP-DB (Rice) LOC_Os04g45900.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a032072 , Zm00025a057370 , Zm00025a020926 , Zm00025a020927 , Zm00025a010381 , Zm00025a056642 , Zm00025a021051 , Zm00025a046668 , Zm00025a035062 , Zm00025a056539
Brachypodium KQK00557 , KQK00555 , PNT69110 , KQJ85264 , PNT61582 , KQJ83865 , PNT61581 , KQJ83862
Barley HORVU7Hr1G097350.1 , HORVU7Hr1G097350.2 , HORVU7Hr1G097350.5 , HORVU7Hr1G097350.4 , HORVU7Hr1G097350.7 , HORVU7Hr1G097350.6 , HORVU7Hr1G097350.9 , HORVU2Hr1G092880.6 , HORVU2Hr1G092880.5 , HORVU2Hr1G092880.4 , HORVU2Hr1G092880.3 , HORVU2Hr1G092880.2 , HORVU2Hr1G092880.1 , HORVU2Hr1G092810.3 , HORVU2Hr1G092810.12 , HORVU2Hr1G092810.13 , HORVU2Hr1G092810.10 , HORVU2Hr1G092810.11 , HORVU2Hr1G092810.16 , HORVU2Hr1G092810.17 , HORVU2Hr1G092810.14 , HORVU2Hr1G092810.15 , HORVU2Hr1G092810.18 , HORVU2Hr1G092810.19 , HORVU6Hr1G045460.1 , HORVU7Hr1G097350.10 , HORVU7Hr1G097350.3 , HORVU2Hr1G092810.20 , HORVU2Hr1G092880.8 , HORVU2Hr1G092880.7 , HORVU7Hr1G097350.8 , HORVU6Hr1G061450.2 , HORVU6Hr1G061450.3 , HORVU6Hr1G061450.1 , HORVU6Hr1G061450.6 , HORVU6Hr1G061450.7 , HORVU6Hr1G061450.4 , HORVU6Hr1G061450.5 , HORVU2Hr1G092810.4 , HORVU2Hr1G092810.8 , HORVU2Hr1G092810.9 , HORVU2Hr1G092810.1 , HORVU2Hr1G092810.2 , HORVU2Hr1G092810.7 , HORVU2Hr1G092810.5 , HORVU2Hr1G092810.6
Wheat TraesCS2A02G391000 , TraesCS2A02G391000 , TraesCS2D02G387700 , TraesCS2D02G387700 , TraesCS2D02G387700 , TraesCS6B02G283900 , TraesCS2A02G427400 , TraesCS2A02G390800 , TraesCS6B02G283900 , TraesCS2B02G408500 , TraesCS2D02G554800 , TraesCS6D02G223200 , TraesCS6D02G223000 , TraesCS6B02G283800 , TraesCS2D02G387800 , TraesCS2D02G387800 , TraesCS2A02G553300 , TraesCS6A02G220900 , TraesCS6D02G223100 , TraesCS6D02G214300 , TraesCS6A02G240900 , TraesCS2B02G585300
Populus -


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cDNA sequences
Sobic.006G164300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G525900 homeobox domain containing protein, expressed -
2 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
3 Sobic.005G203300 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
4 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
5 Sobic.004G099700 receptor-like protein kinase 5 precursor, putative, expressed -
6 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
7 Sobic.009G202400 expressed protein -
8 Sobic.003G410900 CRAL/TRIO domain containing protein, expressed -
9 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
10 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
11 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.001G048000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G265400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
14 Sobic.010G193000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.005G097800 eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
17 Sobic.003G292600 HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed K14490: histidine-containing phosphotransfer peotein
18 Sobic.002G257100 regulatory protein, putative, expressed -
19 Sobic.006G243200 L-asparaginase precursor protein, putative, expressed K13051: ASRGL1, L-asparaginase / beta-aspartyl-peptidase
20 Sobic.003G375900 amino acid transporter, putative, expressed -


Gene co-expression network
sample Sobic006G164300 Sobic006G164300 Sobic001G525900 Sobic001G525900 Sobic006G164300--Sobic001G525900 Sobic001G404500 Sobic001G404500 Sobic006G164300--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic006G164300--Sobic005G203300 Sobic002G046900 Sobic002G046900 Sobic006G164300--Sobic002G046900 Sobic004G099700 Sobic004G099700 Sobic006G164300--Sobic004G099700 Sobic002G281000 Sobic002G281000 Sobic006G164300--Sobic002G281000 Sobic009G202400 Sobic009G202400 Sobic006G164300--Sobic009G202400 Sobic003G410900 Sobic003G410900 Sobic006G164300--Sobic003G410900 Sobic005G175600 Sobic005G175600 Sobic006G164300--Sobic005G175600 Sobic001G525900--Sobic002G281000 Sobic001G525900--Sobic001G404500 Sobic001G019300 Sobic001G019300 Sobic001G525900--Sobic001G019300 Sobic005G021600 Sobic005G021600 Sobic001G525900--Sobic005G021600 Sobic001G525900--Sobic006G164300 Sobic001G048000 Sobic001G048000 Sobic001G525900--Sobic001G048000 Sobic008G063100 Sobic008G063100 Sobic001G525900--Sobic008G063100 Sobic004G063200 Sobic004G063200 Sobic001G525900--Sobic004G063200 Sobic001G321600 Sobic001G321600 Sobic001G525900--Sobic001G321600 Sobic006G123500 Sobic006G123500 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic001G404500--Sobic002G281000 Sobic001G404500--Sobic008G063100 Sobic001G404500--Sobic001G525900 Sobic001G404500--Sobic003G410900 Sobic004G268500 Sobic004G268500 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic001G404500--Sobic004G099700 Sobic010G193000 Sobic010G193000 Sobic005G203300--Sobic010G193000 Sobic005G171300 Sobic005G171300 Sobic005G203300--Sobic005G171300 Sobic005G203300--Sobic002G046900 Sobic005G203300--Sobic006G164300 Sobic009G205700 Sobic009G205700 Sobic005G203300--Sobic009G205700 Sobic004G224500 Sobic004G224500 Sobic005G203300--Sobic004G224500 Sobic009G037200 Sobic009G037200 Sobic005G203300--Sobic009G037200 Sobic005G203300--Sobic001G404500 Sobic009G019100 Sobic009G019100 Sobic005G203300--Sobic009G019100 Sobic006G201100 Sobic006G201100 Sobic002G046900--Sobic006G201100 Sobic002G046900--Sobic005G175600 Sobic010G035500 Sobic010G035500 Sobic002G046900--Sobic010G035500 Sobic006G110900 Sobic006G110900 Sobic002G046900--Sobic006G110900 Sobic002G046900--Sobic004G224500 Sobic002G046900--Sobic006G123500 Sobic010G207500 Sobic010G207500 Sobic002G046900--Sobic010G207500 Sobic002G046900--Sobic001G404500 Sobic002G046900--Sobic005G203300 Sobic004G099700--Sobic006G123500 Sobic004G099700--Sobic001G404500 Sobic007G025900 Sobic007G025900 Sobic004G099700--Sobic007G025900 Sobic008G060300 Sobic008G060300 Sobic004G099700--Sobic008G060300 Sobic004G099700--Sobic004G063200 Sobic004G099700--Sobic003G410900 Sobic008G065200 Sobic008G065200 Sobic004G099700--Sobic008G065200 Sobic004G099700--Sobic006G164300 Sobic004G099700--Sobic010G193000 Sobic002G281000--Sobic001G525900 Sobic002G281000--Sobic001G019300 Sobic002G281000--Sobic008G063100 Sobic002G281000--Sobic009G202400 Sobic002G195700 Sobic002G195700 Sobic002G281000--Sobic002G195700 Sobic005G097800 Sobic005G097800 Sobic002G281000--Sobic005G097800 Sobic002G281000--Sobic004G063200 Sobic002G281000--Sobic001G404500 Sobic002G281000--Sobic005G021600 Sobic007G037800 Sobic007G037800 Sobic009G202400--Sobic007G037800 Sobic009G202400--Sobic002G281000 Sobic004G210601 Sobic004G210601 Sobic009G202400--Sobic004G210601 Sobic009G202400--Sobic005G097800 Sobic005G192600 Sobic005G192600 Sobic009G202400--Sobic005G192600 Sobic005G167500 Sobic005G167500 Sobic009G202400--Sobic005G167500 Sobic005G093300 Sobic005G093300 Sobic009G202400--Sobic005G093300 Sobic009G202400--Sobic008G063100 Sobic004G019400 Sobic004G019400 Sobic009G202400--Sobic004G019400 Sobic003G410900--Sobic001G404500 Sobic006G060800 Sobic006G060800 Sobic003G410900--Sobic006G060800 Sobic003G410900--Sobic004G063200 Sobic003G096500 Sobic003G096500 Sobic003G410900--Sobic003G096500 Sobic001G351400 Sobic001G351400 Sobic003G410900--Sobic001G351400 Sobic003G410900--Sobic004G099700 Sobic003G410900--Sobic006G123500 Sobic003G410900--Sobic009G189000 Sobic003G410900--Sobic006G164300 Sobic005G175600--Sobic002G046900 Sobic005G175600--Sobic008G063100 Sobic005G175600--Sobic001G404500 Sobic005G175500 Sobic005G175500 Sobic005G175600--Sobic005G175500 Sobic002G366100 Sobic002G366100 Sobic005G175600--Sobic002G366100 Sobic005G175600--Sobic001G048000 Sobic005G175600--Sobic005G021600 Sobic005G175600--Sobic001G525900 Sobic005G175600--Sobic002G281000
Octagon: transcription factors


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