Gene annotation
Transcriptome id Sobic.001G048000.2,Sobic.001G048000.3,Sobic.001G048000.1
Synonym Sb01g004410
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WW63 , A0A1Z5S4C5 , A0A1Z5S4F2
Pfam -
Panther DB PTHR33646 PTHR33646:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18130 : -
RAP-DB (Rice) LOC_Os03g59180.2,LOC_Os03g59180.1 : expressed protein
MaizeGDB (Corn) Zm00025a008648
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G048000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G525900 homeobox domain containing protein, expressed -
2 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
3 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
4 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.003G292600 HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed K14490: histidine-containing phosphotransfer peotein
7 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
8 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
9 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
10 Sobic.006G164300 YELLOW STRIPE like 2(PubMedID : 26465154)@- -
11 Sobic.001G068301 - K16189: phytochrome-interacting factor 4
12 Sobic.009G202400 expressed protein -
13 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
14 Sobic.003G413800 cytochrome P450, putative, expressed -
15 Sobic.005G021600 expressed protein -
16 Sobic.001G224900 expressed protein -
17 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
18 Sobic.002G137100 protein kinase family protein, putative, expressed -
19 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
20 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit


Gene co-expression network
sample Sobic001G048000 Sobic001G048000 Sobic001G525900 Sobic001G525900 Sobic001G048000--Sobic001G525900 Sobic002G281000 Sobic002G281000 Sobic001G048000--Sobic002G281000 Sobic001G404500 Sobic001G404500 Sobic001G048000--Sobic001G404500 Sobic005G175600 Sobic005G175600 Sobic001G048000--Sobic005G175600 Sobic002G366100 Sobic002G366100 Sobic001G048000--Sobic002G366100 Sobic003G292600 Sobic003G292600 Sobic001G048000--Sobic003G292600 Sobic001G005500 Sobic001G005500 Sobic001G048000--Sobic001G005500 Sobic005G127000 Sobic005G127000 Sobic001G048000--Sobic005G127000 Sobic002G195700 Sobic002G195700 Sobic001G048000--Sobic002G195700 Sobic001G525900--Sobic002G281000 Sobic001G525900--Sobic001G404500 Sobic001G019300 Sobic001G019300 Sobic001G525900--Sobic001G019300 Sobic005G021600 Sobic005G021600 Sobic001G525900--Sobic005G021600 Sobic006G164300 Sobic006G164300 Sobic001G525900--Sobic006G164300 Sobic001G525900--Sobic001G048000 Sobic008G063100 Sobic008G063100 Sobic001G525900--Sobic008G063100 Sobic004G063200 Sobic004G063200 Sobic001G525900--Sobic004G063200 Sobic001G321600 Sobic001G321600 Sobic001G525900--Sobic001G321600 Sobic002G281000--Sobic001G525900 Sobic002G281000--Sobic001G019300 Sobic002G281000--Sobic008G063100 Sobic009G202400 Sobic009G202400 Sobic002G281000--Sobic009G202400 Sobic002G281000--Sobic002G195700 Sobic005G097800 Sobic005G097800 Sobic002G281000--Sobic005G097800 Sobic002G281000--Sobic004G063200 Sobic002G281000--Sobic001G404500 Sobic002G281000--Sobic005G021600 Sobic006G123500 Sobic006G123500 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic001G404500--Sobic002G281000 Sobic001G404500--Sobic008G063100 Sobic001G404500--Sobic001G525900 Sobic003G410900 Sobic003G410900 Sobic001G404500--Sobic003G410900 Sobic004G268500 Sobic004G268500 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic004G099700 Sobic004G099700 Sobic001G404500--Sobic004G099700 Sobic002G046900 Sobic002G046900 Sobic005G175600--Sobic002G046900 Sobic005G175600--Sobic008G063100 Sobic005G175600--Sobic001G404500 Sobic005G175500 Sobic005G175500 Sobic005G175600--Sobic005G175500 Sobic005G175600--Sobic002G366100 Sobic005G175600--Sobic001G048000 Sobic005G175600--Sobic005G021600 Sobic005G175600--Sobic001G525900 Sobic005G175600--Sobic002G281000 Sobic002G366100--Sobic002G195700 Sobic001G145050 Sobic001G145050 Sobic002G366100--Sobic001G145050 Sobic002G366100--Sobic001G005500 Sobic009G255100 Sobic009G255100 Sobic002G366100--Sobic009G255100 Sobic006G060800 Sobic006G060800 Sobic002G366100--Sobic006G060800 Sobic002G366100--Sobic001G321600 Sobic002G366100--Sobic005G021600 Sobic004G068700 Sobic004G068700 Sobic002G366100--Sobic004G068700 Sobic002G366100--Sobic001G404500 Sobic003G292600--Sobic001G525900 Sobic003G292600--Sobic004G268500 Sobic003G292600--Sobic002G281000 Sobic009G034600 Sobic009G034600 Sobic003G292600--Sobic009G034600 Sobic003G292600--Sobic005G097800 Sobic003G292600--Sobic001G404500 Sobic001G102300 Sobic001G102300 Sobic003G292600--Sobic001G102300 Sobic010G241300 Sobic010G241300 Sobic003G292600--Sobic010G241300 Sobic003G292600--Sobic001G048000 Sobic001G005500--Sobic001G321600 Sobic001G005500--Sobic002G195700 Sobic001G005500--Sobic001G019300 Sobic001G093600 Sobic001G093600 Sobic001G005500--Sobic001G093600 Sobic001G005500--Sobic002G366100 Sobic008G073400 Sobic008G073400 Sobic001G005500--Sobic008G073400 Sobic006G269400 Sobic006G269400 Sobic001G005500--Sobic006G269400 Sobic006G273000 Sobic006G273000 Sobic001G005500--Sobic006G273000 Sobic007G191900 Sobic007G191900 Sobic001G005500--Sobic007G191900 Sobic007G059500 Sobic007G059500 Sobic005G127000--Sobic007G059500 Sobic008G183200 Sobic008G183200 Sobic005G127000--Sobic008G183200 Sobic005G127000--Sobic010G241300 Sobic004G122200 Sobic004G122200 Sobic005G127000--Sobic004G122200 Sobic001G377500 Sobic001G377500 Sobic005G127000--Sobic001G377500 Sobic001G186200 Sobic001G186200 Sobic005G127000--Sobic001G186200 Sobic010G225600 Sobic010G225600 Sobic005G127000--Sobic010G225600 Sobic001G498300 Sobic001G498300 Sobic005G127000--Sobic001G498300 Sobic008G151000 Sobic008G151000 Sobic005G127000--Sobic008G151000 Sobic002G195700--Sobic001G005500 Sobic002G195700--Sobic008G073400 Sobic002G195700--Sobic001G321600 Sobic002G195700--Sobic001G019300 Sobic002G195700--Sobic002G366100 Sobic002G195700--Sobic002G281000 Sobic002G195700--Sobic005G021600 Sobic002G195700--Sobic006G269400 Sobic001G198700 Sobic001G198700 Sobic002G195700--Sobic001G198700
Octagon: transcription factors


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