Gene annotation
Transcriptome id Sobic.001G068301.1
Synonym -
Functional annotation -
UniProt A0A1B6QHN1
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF135
NCBI CDD -
KEGG Orthology K16189; phytochrome-interacting factor 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59060 : phytochrome interacting factor 3-like 6
RAP-DB (Rice) LOC_Os03g56950.2 : phytochrome-interacting factor 4, putative, expressed
MaizeGDB (Corn) Zm00025a008411 , Zm00025a016650
Brachypodium KQK03996 , PNT70375 , KQK12892
Barley -
Wheat TraesCS5B02G422000 , TraesCS5B02G422000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G122200 expressed protein -
2 Sobic.010G225600 - -
3 Sobic.005G097800 eukaryotic aspartyl protease domain containing protein, expressed -
4 Sobic.003G292600 HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed K14490: histidine-containing phosphotransfer peotein
5 Sobic.001G224900 expressed protein -
6 Sobic.001G048000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G135100 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
8 Sobic.002G286400 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
9 Sobic.005G055900 expressed protein -
10 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
11 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -
12 Sobic.003G097800 - -
13 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
14 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
15 Sobic.004G214900 receptor kinase, putative, expressed -
16 Sobic.004G125200 - -
17 Sobic.009G202400 expressed protein -
18 Sobic.008G101400 - -
19 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
20 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -


Gene co-expression network
sample Sobic001G068301 Sobic001G068301 Sobic004G122200 Sobic004G122200 Sobic001G068301--Sobic004G122200 Sobic010G225600 Sobic010G225600 Sobic001G068301--Sobic010G225600 Sobic005G097800 Sobic005G097800 Sobic001G068301--Sobic005G097800 Sobic003G292600 Sobic003G292600 Sobic001G068301--Sobic003G292600 Sobic001G224900 Sobic001G224900 Sobic001G068301--Sobic001G224900 Sobic001G048000 Sobic001G048000 Sobic001G068301--Sobic001G048000 Sobic006G135100 Sobic006G135100 Sobic001G068301--Sobic006G135100 Sobic002G286400 Sobic002G286400 Sobic001G068301--Sobic002G286400 Sobic005G055900 Sobic005G055900 Sobic001G068301--Sobic005G055900 Sobic008G183200 Sobic008G183200 Sobic004G122200--Sobic008G183200 Sobic005G127000 Sobic005G127000 Sobic004G122200--Sobic005G127000 Sobic010G241300 Sobic010G241300 Sobic004G122200--Sobic010G241300 Sobic008G066100 Sobic008G066100 Sobic004G122200--Sobic008G066100 Sobic010G164200 Sobic010G164200 Sobic004G122200--Sobic010G164200 Sobic008G015100 Sobic008G015100 Sobic004G122200--Sobic008G015100 Sobic004G122200--Sobic001G068301 Sobic001G338700 Sobic001G338700 Sobic004G122200--Sobic001G338700 Sobic001G377500 Sobic001G377500 Sobic004G122200--Sobic001G377500 Sobic009G202400 Sobic009G202400 Sobic010G225600--Sobic009G202400 Sobic003G108600 Sobic003G108600 Sobic010G225600--Sobic003G108600 Sobic010G225600--Sobic005G097800 Sobic010G225600--Sobic006G135100 Sobic010G225600--Sobic005G127000 Sobic010G225600--Sobic001G068301 Sobic001G317400 Sobic001G317400 Sobic010G225600--Sobic001G317400 Sobic001G391900 Sobic001G391900 Sobic010G225600--Sobic001G391900 Sobic003G068800 Sobic003G068800 Sobic010G225600--Sobic003G068800 Sobic002G281000 Sobic002G281000 Sobic005G097800--Sobic002G281000 Sobic005G097800--Sobic009G202400 Sobic005G220900 Sobic005G220900 Sobic005G097800--Sobic005G220900 Sobic001G404500 Sobic001G404500 Sobic005G097800--Sobic001G404500 Sobic002G265400 Sobic002G265400 Sobic005G097800--Sobic002G265400 Sobic005G097800--Sobic003G292600 Sobic008G063100 Sobic008G063100 Sobic005G097800--Sobic008G063100 Sobic005G097800--Sobic010G225600 Sobic005G097800--Sobic006G135100 Sobic001G525900 Sobic001G525900 Sobic003G292600--Sobic001G525900 Sobic004G268500 Sobic004G268500 Sobic003G292600--Sobic004G268500 Sobic003G292600--Sobic002G281000 Sobic009G034600 Sobic009G034600 Sobic003G292600--Sobic009G034600 Sobic003G292600--Sobic005G097800 Sobic003G292600--Sobic001G404500 Sobic001G102300 Sobic001G102300 Sobic003G292600--Sobic001G102300 Sobic003G292600--Sobic010G241300 Sobic003G292600--Sobic001G048000 Sobic005G175500 Sobic005G175500 Sobic001G224900--Sobic005G175500 Sobic002G137100 Sobic002G137100 Sobic001G224900--Sobic002G137100 Sobic001G224900--Sobic001G068301 Sobic001G224900--Sobic001G048000 Sobic005G110532 Sobic005G110532 Sobic001G224900--Sobic005G110532 Sobic006G258700 Sobic006G258700 Sobic001G224900--Sobic006G258700 Sobic003G014300 Sobic003G014300 Sobic001G224900--Sobic003G014300 Sobic001G003200 Sobic001G003200 Sobic001G224900--Sobic001G003200 Sobic002G390500 Sobic002G390500 Sobic001G224900--Sobic002G390500 Sobic001G048000--Sobic001G525900 Sobic001G048000--Sobic002G281000 Sobic001G048000--Sobic001G404500 Sobic005G175600 Sobic005G175600 Sobic001G048000--Sobic005G175600 Sobic002G366100 Sobic002G366100 Sobic001G048000--Sobic002G366100 Sobic001G048000--Sobic003G292600 Sobic001G005500 Sobic001G005500 Sobic001G048000--Sobic001G005500 Sobic001G048000--Sobic005G127000 Sobic002G195700 Sobic002G195700 Sobic001G048000--Sobic002G195700 Sobic010G214000 Sobic010G214000 Sobic006G135100--Sobic010G214000 Sobic005G015200 Sobic005G015200 Sobic006G135100--Sobic005G015200 Sobic006G135100--Sobic008G015100 Sobic006G135100--Sobic005G097800 Sobic006G135100--Sobic010G225600 Sobic010G096300 Sobic010G096300 Sobic006G135100--Sobic010G096300 Sobic003G088800 Sobic003G088800 Sobic006G135100--Sobic003G088800 Sobic006G135100--Sobic009G202400 Sobic006G135100--Sobic005G055900 Sobic002G286400--Sobic005G175500 Sobic002G286400--Sobic003G108600 Sobic002G286400--Sobic001G068301 Sobic001G512500 Sobic001G512500 Sobic002G286400--Sobic001G512500 Sobic002G403600 Sobic002G403600 Sobic002G286400--Sobic002G403600 Sobic001G158900 Sobic001G158900 Sobic002G286400--Sobic001G158900 Sobic001G065600 Sobic001G065600 Sobic002G286400--Sobic001G065600 Sobic006G055000 Sobic006G055000 Sobic002G286400--Sobic006G055000 Sobic008G001000 Sobic008G001000 Sobic002G286400--Sobic008G001000 Sobic001G435500 Sobic001G435500 Sobic005G055900--Sobic001G435500 Sobic005G055900--Sobic003G088800 Sobic002G337001 Sobic002G337001 Sobic005G055900--Sobic002G337001 Sobic003G163700 Sobic003G163700 Sobic005G055900--Sobic003G163700 Sobic001G275200 Sobic001G275200 Sobic005G055900--Sobic001G275200 Sobic004G144700 Sobic004G144700 Sobic005G055900--Sobic004G144700 Sobic010G128000 Sobic010G128000 Sobic005G055900--Sobic010G128000 Sobic005G203900 Sobic005G203900 Sobic005G055900--Sobic005G203900 Sobic005G055900--Sobic006G135100
Octagon: transcription factors


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