Gene annotation
Transcriptome id Sobic.008G101400.2
Synonym
Functional annotation -
UniProt A0A1Z5R5W0
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
2 Sobic.004G201700 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
3 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
4 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
5 Sobic.009G062500 -(PubMedID : 26976818)@triose phosphate/phosphate translocator, non-green plastid,chloroplast precursor, putative, expressed K15283: solute carrier family 35, member E1
6 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
7 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
8 Sobic.007G223500 expressed protein -
9 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
10 Sobic.009G171300 PX domain containing protein, expressed -
11 Sobic.005G111500 FHA domain containing protein, putative, expressed -
12 Sobic.005G055900 expressed protein -
13 Sobic.003G369000 - -
14 Sobic.004G122200 expressed protein -
15 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
16 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
17 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
18 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
19 Sobic.003G435800 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed K13600: chlorophyllide a oxygenase
20 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta


Gene co-expression network
sample Sobic008G101400 Sobic008G101400 Sobic008G015100 Sobic008G015100 Sobic008G101400--Sobic008G015100 Sobic004G201700 Sobic004G201700 Sobic008G101400--Sobic004G201700 Sobic010G189300 Sobic010G189300 Sobic008G101400--Sobic010G189300 Sobic002G316700 Sobic002G316700 Sobic008G101400--Sobic002G316700 Sobic009G062500 Sobic009G062500 Sobic008G101400--Sobic009G062500 Sobic009G164300 Sobic009G164300 Sobic008G101400--Sobic009G164300 Sobic007G136900 Sobic007G136900 Sobic008G101400--Sobic007G136900 Sobic007G223500 Sobic007G223500 Sobic008G101400--Sobic007G223500 Sobic001G435500 Sobic001G435500 Sobic008G101400--Sobic001G435500 Sobic008G015100--Sobic010G189300 Sobic004G272600 Sobic004G272600 Sobic008G015100--Sobic004G272600 Sobic001G070500 Sobic001G070500 Sobic008G015100--Sobic001G070500 Sobic008G015100--Sobic001G435500 Sobic008G015100--Sobic007G136900 Sobic005G099700 Sobic005G099700 Sobic008G015100--Sobic005G099700 Sobic008G015100--Sobic007G223500 Sobic008G015100--Sobic008G101400 Sobic005G111200 Sobic005G111200 Sobic008G015100--Sobic005G111200 Sobic004G201700--Sobic008G101400 Sobic008G072700 Sobic008G072700 Sobic004G201700--Sobic008G072700 Sobic007G213700 Sobic007G213700 Sobic004G201700--Sobic007G213700 Sobic006G258700 Sobic006G258700 Sobic004G201700--Sobic006G258700 Sobic004G201700--Sobic008G015100 Sobic004G224500 Sobic004G224500 Sobic004G201700--Sobic004G224500 Sobic003G037300 Sobic003G037300 Sobic004G201700--Sobic003G037300 Sobic001G314900 Sobic001G314900 Sobic004G201700--Sobic001G314900 Sobic001G072700 Sobic001G072700 Sobic004G201700--Sobic001G072700 Sobic010G189300--Sobic001G070500 Sobic010G189300--Sobic007G136900 Sobic001G046900 Sobic001G046900 Sobic010G189300--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G189300--Sobic006G073500 Sobic002G352100 Sobic002G352100 Sobic010G189300--Sobic002G352100 Sobic002G033900 Sobic002G033900 Sobic010G189300--Sobic002G033900 Sobic009G229700 Sobic009G229700 Sobic010G189300--Sobic009G229700 Sobic004G235200 Sobic004G235200 Sobic010G189300--Sobic004G235200 Sobic005G087000 Sobic005G087000 Sobic010G189300--Sobic005G087000 Sobic002G316700--Sobic007G223500 Sobic009G143100 Sobic009G143100 Sobic002G316700--Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic002G316700--Sobic007G071500 Sobic003G209900 Sobic003G209900 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic008G063500 Sobic008G063500 Sobic002G316700--Sobic008G063500 Sobic008G134800 Sobic008G134800 Sobic002G316700--Sobic008G134800 Sobic001G177000 Sobic001G177000 Sobic002G316700--Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic002G316700--Sobic004G056900 Sobic005G111500 Sobic005G111500 Sobic009G062500--Sobic005G111500 Sobic007G076900 Sobic007G076900 Sobic009G062500--Sobic007G076900 Sobic009G062500--Sobic008G101400 Sobic008G183200 Sobic008G183200 Sobic009G062500--Sobic008G183200 Sobic009G062500--Sobic008G015100 Sobic009G062500--Sobic008G072700 Sobic010G076800 Sobic010G076800 Sobic009G062500--Sobic010G076800 Sobic009G062500--Sobic004G201700 Sobic001G525900 Sobic001G525900 Sobic009G062500--Sobic001G525900 Sobic009G164300--Sobic007G223500 Sobic001G425400 Sobic001G425400 Sobic009G164300--Sobic001G425400 Sobic009G164300--Sobic002G316700 Sobic009G055800 Sobic009G055800 Sobic009G164300--Sobic009G055800 Sobic009G164300--Sobic009G143100 Sobic004G175500 Sobic004G175500 Sobic009G164300--Sobic004G175500 Sobic008G066100 Sobic008G066100 Sobic009G164300--Sobic008G066100 Sobic009G164300--Sobic008G134800 Sobic003G387800 Sobic003G387800 Sobic009G164300--Sobic003G387800 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic007G136900--Sobic010G189300 Sobic002G242000 Sobic002G242000 Sobic007G136900--Sobic002G242000 Sobic007G136900--Sobic001G177000 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic007G136900--Sobic009G229700 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic007G223500--Sobic003G387800 Sobic007G223500--Sobic008G066100 Sobic001G435500--Sobic001G070500 Sobic001G435500--Sobic010G189300 Sobic001G435500--Sobic005G099700 Sobic001G435500--Sobic007G136900 Sobic001G435500--Sobic002G033900 Sobic001G435500--Sobic004G056900 Sobic001G435500--Sobic009G229700 Sobic001G066600 Sobic001G066600 Sobic001G435500--Sobic001G066600 Sobic001G435500--Sobic006G073500
Octagon: transcription factors


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