Gene annotation
Transcriptome id Sobic.006G135100.1
Synonym ATCOL2, SbBBX12, B-box (BBX) protein, COL2, SbBBX12;B-box (BBX) protein, Sb06g021480
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5YBH1
Pfam PF00643 PF06203
Panther DB PTHR31319 PTHR31319:SF8
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G57660 : CONSTANS-like 5
RAP-DB (Rice) LOC_Os04g42020.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a031908 , Zm00025a056392 , Zm00025a010808 , Zm00025a021217
Brachypodium KQK00284 , PNT61381 , KQJ83376
Barley HORVU2Hr1G085910.21 , HORVU2Hr1G085910.22 , HORVU2Hr1G085910.1 , HORVU6Hr1G056000.2 , HORVU6Hr1G056000.1
Wheat TraesCS2B02G372000 , TraesCS6B02G248400 , TraesCS2D02G351900 , TraesCS2A02G353900 , TraesCS6A02G218900 , TraesCS6D02G202000
Populus -


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cDNA sequences
Sobic.006G135100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G214000 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
2 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
3 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
4 Sobic.005G097800 eukaryotic aspartyl protease domain containing protein, expressed -
5 Sobic.010G225600 - -
6 Sobic.010G096300 -(PubMedID : 22968911)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
7 Sobic.003G088800 multi-copper oxidase type I family protein, putative, expressed -
8 Sobic.009G202400 expressed protein -
9 Sobic.005G055900 expressed protein -
10 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -
11 Sobic.002G265400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
12 Sobic.001G068301 - K16189: phytochrome-interacting factor 4
13 Sobic.009G189000 expressed protein -
14 Sobic.004G201700 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
15 Sobic.007G213700 -(PubMedID : 26976818)@aminotransferase, putative, expressed K00830: alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase
16 Sobic.004G122200 expressed protein -
17 Sobic.001G525900 homeobox domain containing protein, expressed -
18 Sobic.003G292600 HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed K14490: histidine-containing phosphotransfer peotein
19 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
20 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP


Gene co-expression network
sample Sobic006G135100 Sobic006G135100 Sobic010G214000 Sobic010G214000 Sobic006G135100--Sobic010G214000 Sobic005G015200 Sobic005G015200 Sobic006G135100--Sobic005G015200 Sobic008G015100 Sobic008G015100 Sobic006G135100--Sobic008G015100 Sobic005G097800 Sobic005G097800 Sobic006G135100--Sobic005G097800 Sobic010G225600 Sobic010G225600 Sobic006G135100--Sobic010G225600 Sobic010G096300 Sobic010G096300 Sobic006G135100--Sobic010G096300 Sobic003G088800 Sobic003G088800 Sobic006G135100--Sobic003G088800 Sobic009G202400 Sobic009G202400 Sobic006G135100--Sobic009G202400 Sobic005G055900 Sobic005G055900 Sobic006G135100--Sobic005G055900 Sobic003G108600 Sobic003G108600 Sobic010G214000--Sobic003G108600 Sobic009G189000 Sobic009G189000 Sobic010G214000--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic010G214000--Sobic001G102300 Sobic010G214000--Sobic006G135100 Sobic001G053900 Sobic001G053900 Sobic010G214000--Sobic001G053900 Sobic003G068800 Sobic003G068800 Sobic010G214000--Sobic003G068800 Sobic006G258700 Sobic006G258700 Sobic010G214000--Sobic006G258700 Sobic001G351400 Sobic001G351400 Sobic010G214000--Sobic001G351400 Sobic003G292600 Sobic003G292600 Sobic010G214000--Sobic003G292600 Sobic003G097800 Sobic003G097800 Sobic005G015200--Sobic003G097800 Sobic004G272600 Sobic004G272600 Sobic005G015200--Sobic004G272600 Sobic001G338700 Sobic001G338700 Sobic005G015200--Sobic001G338700 Sobic009G191300 Sobic009G191300 Sobic005G015200--Sobic009G191300 Sobic002G233300 Sobic002G233300 Sobic005G015200--Sobic002G233300 Sobic005G167500 Sobic005G167500 Sobic005G015200--Sobic005G167500 Sobic001G070500 Sobic001G070500 Sobic005G015200--Sobic001G070500 Sobic003G052500 Sobic003G052500 Sobic005G015200--Sobic003G052500 Sobic005G015200--Sobic006G135100 Sobic010G189300 Sobic010G189300 Sobic008G015100--Sobic010G189300 Sobic008G015100--Sobic004G272600 Sobic008G015100--Sobic001G070500 Sobic001G435500 Sobic001G435500 Sobic008G015100--Sobic001G435500 Sobic007G136900 Sobic007G136900 Sobic008G015100--Sobic007G136900 Sobic005G099700 Sobic005G099700 Sobic008G015100--Sobic005G099700 Sobic007G223500 Sobic007G223500 Sobic008G015100--Sobic007G223500 Sobic008G101400 Sobic008G101400 Sobic008G015100--Sobic008G101400 Sobic005G111200 Sobic005G111200 Sobic008G015100--Sobic005G111200 Sobic002G281000 Sobic002G281000 Sobic005G097800--Sobic002G281000 Sobic005G097800--Sobic009G202400 Sobic005G220900 Sobic005G220900 Sobic005G097800--Sobic005G220900 Sobic001G404500 Sobic001G404500 Sobic005G097800--Sobic001G404500 Sobic002G265400 Sobic002G265400 Sobic005G097800--Sobic002G265400 Sobic005G097800--Sobic003G292600 Sobic008G063100 Sobic008G063100 Sobic005G097800--Sobic008G063100 Sobic005G097800--Sobic010G225600 Sobic005G097800--Sobic006G135100 Sobic010G225600--Sobic009G202400 Sobic010G225600--Sobic003G108600 Sobic010G225600--Sobic005G097800 Sobic010G225600--Sobic006G135100 Sobic005G127000 Sobic005G127000 Sobic010G225600--Sobic005G127000 Sobic001G068301 Sobic001G068301 Sobic010G225600--Sobic001G068301 Sobic001G317400 Sobic001G317400 Sobic010G225600--Sobic001G317400 Sobic001G391900 Sobic001G391900 Sobic010G225600--Sobic001G391900 Sobic010G225600--Sobic003G068800 Sobic006G103400 Sobic006G103400 Sobic010G096300--Sobic006G103400 Sobic004G227200 Sobic004G227200 Sobic010G096300--Sobic004G227200 Sobic006G093900 Sobic006G093900 Sobic010G096300--Sobic006G093900 Sobic001G233400 Sobic001G233400 Sobic010G096300--Sobic001G233400 Sobic003G435800 Sobic003G435800 Sobic010G096300--Sobic003G435800 Sobic010G096300--Sobic007G223500 Sobic001G035800 Sobic001G035800 Sobic010G096300--Sobic001G035800 Sobic001G069000 Sobic001G069000 Sobic010G096300--Sobic001G069000 Sobic009G164300 Sobic009G164300 Sobic010G096300--Sobic009G164300 Sobic001G275200 Sobic001G275200 Sobic003G088800--Sobic001G275200 Sobic003G088800--Sobic001G435500 Sobic002G337001 Sobic002G337001 Sobic003G088800--Sobic002G337001 Sobic003G088800--Sobic008G015100 Sobic001G019300 Sobic001G019300 Sobic003G088800--Sobic001G019300 Sobic003G088800--Sobic005G055900 Sobic005G203900 Sobic005G203900 Sobic003G088800--Sobic005G203900 Sobic003G369000 Sobic003G369000 Sobic003G088800--Sobic003G369000 Sobic003G088800--Sobic005G099700 Sobic007G037800 Sobic007G037800 Sobic009G202400--Sobic007G037800 Sobic009G202400--Sobic002G281000 Sobic004G210601 Sobic004G210601 Sobic009G202400--Sobic004G210601 Sobic009G202400--Sobic005G097800 Sobic005G192600 Sobic005G192600 Sobic009G202400--Sobic005G192600 Sobic009G202400--Sobic005G167500 Sobic005G093300 Sobic005G093300 Sobic009G202400--Sobic005G093300 Sobic009G202400--Sobic008G063100 Sobic004G019400 Sobic004G019400 Sobic009G202400--Sobic004G019400 Sobic005G055900--Sobic001G435500 Sobic005G055900--Sobic003G088800 Sobic005G055900--Sobic002G337001 Sobic003G163700 Sobic003G163700 Sobic005G055900--Sobic003G163700 Sobic005G055900--Sobic001G275200 Sobic004G144700 Sobic004G144700 Sobic005G055900--Sobic004G144700 Sobic010G128000 Sobic010G128000 Sobic005G055900--Sobic010G128000 Sobic005G055900--Sobic005G203900 Sobic005G055900--Sobic006G135100
Octagon: transcription factors


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