Gene annotation
Transcriptome id Sobic.010G214000.1
Synonym ATCOL5, SbBBX22, B-box (BBX) protein, Sb10g026060, COL5
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5Z775
Pfam PF00643 PF06203
Panther DB PTHR31319 PTHR31319:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G24790 : CONSTANS-like 3
RAP-DB (Rice) LOC_Os06g44450.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a031908 , Zm00025a019184 , Zm00025a051716 , Zm00025a021217
Brachypodium PNT61381 , KQK16890 , KQJ93625 , KQJ83376
Barley HORVU2Hr1G085910.21 , HORVU6Hr1G030080.6 , HORVU6Hr1G030080.3 , HORVU6Hr1G030080.5 , HORVU6Hr1G030080.4 , HORVU0Hr1G022380.1
Wheat TraesCS2B02G372000 , TraesCS6D02G140900 , TraesCS6D02G140900 , TraesCS7B02G400600 , TraesCS2D02G351900 , TraesCS2A02G353900 , TraesCS7A02G497200 , TraesCS6A02G150900 , TraesCS6A02G150900 , TraesCS7D02G484400 , TraesCS6B02G179000 , TraesCS6B02G179000
Populus -


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cDNA sequences
Sobic.010G214000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -
2 Sobic.009G189000 expressed protein -
3 Sobic.001G102300 homeobox domain containing protein, expressed -
4 Sobic.006G135100 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
5 Sobic.001G053900 nodulin, putative, expressed -
6 Sobic.003G068800 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
7 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
8 Sobic.001G351400 Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed -
9 Sobic.003G292600 HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed K14490: histidine-containing phosphotransfer peotein
10 Sobic.006G172900 scarecrow, putative, expressed -
11 Sobic.001G300201 - -
12 Sobic.010G184600 Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
13 Sobic.002G376700 EF hand family protein, putative -
14 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
15 Sobic.004G201700 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
16 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
17 Sobic.003G014300 expressed protein -
18 Sobic.009G023401 - -
19 Sobic.010G063200 zinc finger family protein, putative, expressed -
20 Sobic.001G418700 SLT1 protein, putative, expressed -


Gene co-expression network
sample Sobic010G214000 Sobic010G214000 Sobic003G108600 Sobic003G108600 Sobic010G214000--Sobic003G108600 Sobic009G189000 Sobic009G189000 Sobic010G214000--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic010G214000--Sobic001G102300 Sobic006G135100 Sobic006G135100 Sobic010G214000--Sobic006G135100 Sobic001G053900 Sobic001G053900 Sobic010G214000--Sobic001G053900 Sobic003G068800 Sobic003G068800 Sobic010G214000--Sobic003G068800 Sobic006G258700 Sobic006G258700 Sobic010G214000--Sobic006G258700 Sobic001G351400 Sobic001G351400 Sobic010G214000--Sobic001G351400 Sobic003G292600 Sobic003G292600 Sobic010G214000--Sobic003G292600 Sobic003G108600--Sobic010G214000 Sobic003G108600--Sobic009G189000 Sobic003G108600--Sobic003G068800 Sobic003G108600--Sobic001G102300 Sobic010G225600 Sobic010G225600 Sobic003G108600--Sobic010G225600 Sobic003G108600--Sobic006G258700 Sobic003G108600--Sobic006G135100 Sobic004G113800 Sobic004G113800 Sobic003G108600--Sobic004G113800 Sobic001G418700 Sobic001G418700 Sobic003G108600--Sobic001G418700 Sobic004G063200 Sobic004G063200 Sobic009G189000--Sobic004G063200 Sobic009G189000--Sobic010G214000 Sobic009G189000--Sobic003G108600 Sobic001G404500 Sobic001G404500 Sobic009G189000--Sobic001G404500 Sobic009G023401 Sobic009G023401 Sobic009G189000--Sobic009G023401 Sobic009G189000--Sobic001G351400 Sobic002G265400 Sobic002G265400 Sobic009G189000--Sobic002G265400 Sobic001G005500 Sobic001G005500 Sobic009G189000--Sobic001G005500 Sobic010G063200 Sobic010G063200 Sobic009G189000--Sobic010G063200 Sobic009G034600 Sobic009G034600 Sobic001G102300--Sobic009G034600 Sobic001G102300--Sobic003G108600 Sobic001G102300--Sobic003G068800 Sobic001G102300--Sobic010G214000 Sobic004G096100 Sobic004G096100 Sobic001G102300--Sobic004G096100 Sobic001G102300--Sobic001G351400 Sobic001G300201 Sobic001G300201 Sobic001G102300--Sobic001G300201 Sobic004G359200 Sobic004G359200 Sobic001G102300--Sobic004G359200 Sobic001G102300--Sobic003G292600 Sobic006G135100--Sobic010G214000 Sobic005G015200 Sobic005G015200 Sobic006G135100--Sobic005G015200 Sobic008G015100 Sobic008G015100 Sobic006G135100--Sobic008G015100 Sobic005G097800 Sobic005G097800 Sobic006G135100--Sobic005G097800 Sobic006G135100--Sobic010G225600 Sobic010G096300 Sobic010G096300 Sobic006G135100--Sobic010G096300 Sobic003G088800 Sobic003G088800 Sobic006G135100--Sobic003G088800 Sobic009G202400 Sobic009G202400 Sobic006G135100--Sobic009G202400 Sobic005G055900 Sobic005G055900 Sobic006G135100--Sobic005G055900 Sobic004G096300 Sobic004G096300 Sobic001G053900--Sobic004G096300 Sobic002G376700 Sobic002G376700 Sobic001G053900--Sobic002G376700 Sobic001G053900--Sobic010G214000 Sobic001G291200 Sobic001G291200 Sobic001G053900--Sobic001G291200 Sobic003G264901 Sobic003G264901 Sobic001G053900--Sobic003G264901 Sobic001G053900--Sobic004G113800 Sobic006G172900 Sobic006G172900 Sobic001G053900--Sobic006G172900 Sobic008G152200 Sobic008G152200 Sobic001G053900--Sobic008G152200 Sobic007G071000 Sobic007G071000 Sobic001G053900--Sobic007G071000 Sobic003G068800--Sobic003G108600 Sobic003G068800--Sobic001G102300 Sobic001G377500 Sobic001G377500 Sobic003G068800--Sobic001G377500 Sobic001G158900 Sobic001G158900 Sobic003G068800--Sobic001G158900 Sobic001G065600 Sobic001G065600 Sobic003G068800--Sobic001G065600 Sobic002G359600 Sobic002G359600 Sobic003G068800--Sobic002G359600 Sobic005G188600 Sobic005G188600 Sobic003G068800--Sobic005G188600 Sobic001G098301 Sobic001G098301 Sobic003G068800--Sobic001G098301 Sobic007G204900 Sobic007G204900 Sobic003G068800--Sobic007G204900 Sobic003G014300 Sobic003G014300 Sobic006G258700--Sobic003G014300 Sobic010G269400 Sobic010G269400 Sobic006G258700--Sobic010G269400 Sobic004G298900 Sobic004G298900 Sobic006G258700--Sobic004G298900 Sobic006G258700--Sobic001G351400 Sobic003G037300 Sobic003G037300 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic001G286600 Sobic001G286600 Sobic006G258700--Sobic001G286600 Sobic006G258700--Sobic001G404500 Sobic001G351400--Sobic006G258700 Sobic001G351400--Sobic009G189000 Sobic001G351400--Sobic001G102300 Sobic002G362100 Sobic002G362100 Sobic001G351400--Sobic002G362100 Sobic010G207500 Sobic010G207500 Sobic001G351400--Sobic010G207500 Sobic001G351400--Sobic001G404500 Sobic010G184600 Sobic010G184600 Sobic001G351400--Sobic010G184600 Sobic003G410900 Sobic003G410900 Sobic001G351400--Sobic003G410900 Sobic001G525900 Sobic001G525900 Sobic001G351400--Sobic001G525900 Sobic003G292600--Sobic001G525900 Sobic004G268500 Sobic004G268500 Sobic003G292600--Sobic004G268500 Sobic002G281000 Sobic002G281000 Sobic003G292600--Sobic002G281000 Sobic003G292600--Sobic009G034600 Sobic003G292600--Sobic005G097800 Sobic003G292600--Sobic001G404500 Sobic003G292600--Sobic001G102300 Sobic010G241300 Sobic010G241300 Sobic003G292600--Sobic010G241300 Sobic001G048000 Sobic001G048000 Sobic003G292600--Sobic001G048000
Octagon: transcription factors


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