Gene annotation
| Transcriptome id | Sobic.001G053900.2,Sobic.001G053900.3 |
|---|---|
| Synonym | Sb01g004940 |
| Functional annotation | nodulin, putative, expressed |
| UniProt | C5WX40 |
| Pfam | PF06813 |
| Panther DB | PTHR21576 PTHR21576:SF18 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G39210 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g58580.1 : nodulin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a045264 , Zm00025a024846 , Zm00025a015948 , Zm00025a016051 , Zm00025a007605 , Zm00025a008596 |
| Brachypodium | PNT76871 , KQJ86716 , KQK12657 , KQK13777 , KQJ96963 , KQK20512 |
| Barley | HORVU3Hr1G086040.3 , HORVU3Hr1G086040.1 , HORVU3Hr1G086040.7 , HORVU3Hr1G086040.6 , HORVU3Hr1G086040.5 , HORVU3Hr1G086040.4 , HORVU1Hr1G019710.1 , HORVU5Hr1G106960.8 , HORVU5Hr1G106960.5 , HORVU5Hr1G106960.4 , HORVU5Hr1G106960.7 , HORVU5Hr1G106960.6 , HORVU5Hr1G106960.1 , HORVU5Hr1G106960.3 , HORVU5Hr1G106960.2 , HORVU3Hr1G086040.2 , HORVU7Hr1G110840.5 , HORVU7Hr1G110840.4 , HORVU7Hr1G110840.3 , HORVU7Hr1G110840.2 , HORVU7Hr1G110840.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G053900 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G096300 | protein phosphatase 2C, putative, expressed | - |
| 2 | Sobic.002G376700 | EF hand family protein, putative | - |
| 3 | Sobic.010G214000 | B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed | - |
| 4 | Sobic.001G291200 | - | - |
| 5 | Sobic.003G264901 | - | - |
| 6 | Sobic.004G113800 | CAPIP1, putative, expressed | K14496: abscisic acid receptor PYR/PYL family |
| 7 | Sobic.006G172900 | scarecrow, putative, expressed | - |
| 8 | Sobic.008G152200 | DC1 domain-containing protein, putative, expressed | - |
| 9 | Sobic.007G071000 | no apical meristem protein, putative, expressed | - |
| 10 | Sobic.010G172200 | cytochrome P450, putative, expressed | - |
| 11 | Sobic.001G293800 | chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed | K01177: beta-amylase |
| 12 | Sobic.006G053700 | ACT domain containing protein, expressed | - |
| 13 | Sobic.001G465100 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 14 | Sobic.006G026900 | inorganic phosphate transporter, putative, expressed | K08176: MFS transporter, PHS family, inorganic phosphate transporter |
| 15 | Sobic.003G408400 | PCF-like (ClassI) Subclade 3 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 16 | Sobic.003G108600 | heat shock protein DnaJ, putative, expressed | - |
| 17 | Sobic.003G391100 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 18 | Sobic.001G377000 | auxin-repressed protein, putative, expressed | - |
| 19 | Sobic.003G308700 | BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed | K14508: regulatory protein NPR1 |
| 20 | Sobic.002G226000 | leucine-rich repeat family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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