Gene annotation
Transcriptome id Sobic.003G391100.1
Synonym Sb03g042860
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6Q7M4
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05805 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g67480.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026403
Brachypodium KQK11049 , KQK11048 , PNT73394 , PNT73395 , PNT73396 , PNT73397 , KQK11050
Barley HORVU3Hr1G089090.11 , HORVU3Hr1G089090.10 , HORVU3Hr1G089090.2 , HORVU3Hr1G089090.5 , HORVU3Hr1G089090.7 , HORVU3Hr1G089090.8
Wheat TraesCS3B02G426900 , TraesCS6B02G184700 , TraesCS3A02G395000 , TraesCS3A02G395000 , TraesCS4B02G124100 , TraesCS4B02G124100 , TraesCS4B02G124100 , TraesCS3D02G388700 , TraesCS6D02G038400 , TraesCS6D02G038400
Populus -


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cDNA sequences
Sobic.003G391100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465100 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.006G197800 zinc-binding protein, putative, expressed -
3 Sobic.008G042500 expressed protein -
4 Sobic.003G284300 expressed protein -
5 Sobic.001G053900 nodulin, putative, expressed -
6 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
7 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
8 Sobic.010G214000 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
9 Sobic.010G245100 lectin-like receptor kinase 1, putative, expressed -
10 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
11 Sobic.001G291200 - -
12 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
13 Sobic.006G172900 scarecrow, putative, expressed -
14 Sobic.006G273000 AT hook motif domain containing protein, expressed -
15 Sobic.003G013600 expressed protein -
16 Sobic.006G152600 - -
17 Sobic.010G265800 tyrosine protein kinase domain containing protein, putative, expressed -
18 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
19 Sobic.004G275200 zinc-binding protein, putative, expressed -
20 Sobic.001G293800 chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed K01177: beta-amylase


Gene co-expression network
sample Sobic003G391100 Sobic003G391100 Sobic001G465100 Sobic001G465100 Sobic003G391100--Sobic001G465100 Sobic006G197800 Sobic006G197800 Sobic003G391100--Sobic006G197800 Sobic008G042500 Sobic008G042500 Sobic003G391100--Sobic008G042500 Sobic003G284300 Sobic003G284300 Sobic003G391100--Sobic003G284300 Sobic001G053900 Sobic001G053900 Sobic003G391100--Sobic001G053900 Sobic003G123300 Sobic003G123300 Sobic003G391100--Sobic003G123300 Sobic004G096300 Sobic004G096300 Sobic003G391100--Sobic004G096300 Sobic010G214000 Sobic010G214000 Sobic003G391100--Sobic010G214000 Sobic010G245100 Sobic010G245100 Sobic003G391100--Sobic010G245100 Sobic001G465100--Sobic008G042500 Sobic001G465100--Sobic003G391100 Sobic001G465100--Sobic003G123300 Sobic001G078900 Sobic001G078900 Sobic001G465100--Sobic001G078900 Sobic004G325900 Sobic004G325900 Sobic001G465100--Sobic004G325900 Sobic002G376700 Sobic002G376700 Sobic001G465100--Sobic002G376700 Sobic006G241350 Sobic006G241350 Sobic001G465100--Sobic006G241350 Sobic001G465100--Sobic004G096300 Sobic001G465100--Sobic001G053900 Sobic006G197800--Sobic003G284300 Sobic001G288100 Sobic001G288100 Sobic006G197800--Sobic001G288100 Sobic006G197800--Sobic003G391100 Sobic002G257100 Sobic002G257100 Sobic006G197800--Sobic002G257100 Sobic002G376000 Sobic002G376000 Sobic006G197800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G197800--Sobic010G157500 Sobic006G197800--Sobic003G123300 Sobic009G038200 Sobic009G038200 Sobic006G197800--Sobic009G038200 Sobic009G213400 Sobic009G213400 Sobic006G197800--Sobic009G213400 Sobic008G042500--Sobic001G465100 Sobic008G042500--Sobic004G096300 Sobic008G042500--Sobic003G391100 Sobic007G152101 Sobic007G152101 Sobic008G042500--Sobic007G152101 Sobic010G280100 Sobic010G280100 Sobic008G042500--Sobic010G280100 Sobic006G172900 Sobic006G172900 Sobic008G042500--Sobic006G172900 Sobic001G240800 Sobic001G240800 Sobic008G042500--Sobic001G240800 Sobic008G042500--Sobic001G053900 Sobic003G308700 Sobic003G308700 Sobic008G042500--Sobic003G308700 Sobic003G284300--Sobic009G038200 Sobic006G273000 Sobic006G273000 Sobic003G284300--Sobic006G273000 Sobic001G005500 Sobic001G005500 Sobic003G284300--Sobic001G005500 Sobic001G321600 Sobic001G321600 Sobic003G284300--Sobic001G321600 Sobic001G093600 Sobic001G093600 Sobic003G284300--Sobic001G093600 Sobic001G019300 Sobic001G019300 Sobic003G284300--Sobic001G019300 Sobic003G284300--Sobic006G197800 Sobic005G063900 Sobic005G063900 Sobic003G284300--Sobic005G063900 Sobic007G014600 Sobic007G014600 Sobic003G284300--Sobic007G014600 Sobic001G053900--Sobic004G096300 Sobic001G053900--Sobic002G376700 Sobic001G053900--Sobic010G214000 Sobic001G291200 Sobic001G291200 Sobic001G053900--Sobic001G291200 Sobic003G264901 Sobic003G264901 Sobic001G053900--Sobic003G264901 Sobic004G113800 Sobic004G113800 Sobic001G053900--Sobic004G113800 Sobic001G053900--Sobic006G172900 Sobic008G152200 Sobic008G152200 Sobic001G053900--Sobic008G152200 Sobic007G071000 Sobic007G071000 Sobic001G053900--Sobic007G071000 Sobic003G013600 Sobic003G013600 Sobic003G123300--Sobic003G013600 Sobic003G123300--Sobic001G465100 Sobic006G051100 Sobic006G051100 Sobic003G123300--Sobic006G051100 Sobic001G225600 Sobic001G225600 Sobic003G123300--Sobic001G225600 Sobic002G421600 Sobic002G421600 Sobic003G123300--Sobic002G421600 Sobic003G123300--Sobic006G241350 Sobic002G367700 Sobic002G367700 Sobic003G123300--Sobic002G367700 Sobic001G530350 Sobic001G530350 Sobic003G123300--Sobic001G530350 Sobic010G267000 Sobic010G267000 Sobic003G123300--Sobic010G267000 Sobic010G172200 Sobic010G172200 Sobic004G096300--Sobic010G172200 Sobic001G293800 Sobic001G293800 Sobic004G096300--Sobic001G293800 Sobic001G377000 Sobic001G377000 Sobic004G096300--Sobic001G377000 Sobic004G096300--Sobic009G213400 Sobic004G096300--Sobic003G264901 Sobic006G053700 Sobic006G053700 Sobic004G096300--Sobic006G053700 Sobic004G096300--Sobic001G053900 Sobic004G096300--Sobic007G014600 Sobic004G096300--Sobic008G152200 Sobic003G108600 Sobic003G108600 Sobic010G214000--Sobic003G108600 Sobic009G189000 Sobic009G189000 Sobic010G214000--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic010G214000--Sobic001G102300 Sobic006G135100 Sobic006G135100 Sobic010G214000--Sobic006G135100 Sobic010G214000--Sobic001G053900 Sobic003G068800 Sobic003G068800 Sobic010G214000--Sobic003G068800 Sobic006G258700 Sobic006G258700 Sobic010G214000--Sobic006G258700 Sobic001G351400 Sobic001G351400 Sobic010G214000--Sobic001G351400 Sobic003G292600 Sobic003G292600 Sobic010G214000--Sobic003G292600 Sobic010G245100--Sobic009G213400 Sobic010G245100--Sobic006G273000 Sobic003G222300 Sobic003G222300 Sobic010G245100--Sobic003G222300 Sobic010G245100--Sobic003G284300 Sobic001G275200 Sobic001G275200 Sobic010G245100--Sobic001G275200 Sobic010G245100--Sobic001G005500 Sobic010G052500 Sobic010G052500 Sobic010G245100--Sobic010G052500 Sobic005G055900 Sobic005G055900 Sobic010G245100--Sobic005G055900 Sobic010G245100--Sobic001G093600
Octagon: transcription factors


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