Gene annotation
Transcriptome id Sobic.002G376000.1
Synonym Sb02g039360, ATL3
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
ring-H2 zinc finger protein, putative, expressed
UniProt A0A1B6QFJ8
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF109
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72310 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os07g42610.1 : RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a015222 , Zm00025a043995 , Zm00025a002772 , Zm00025a048768
Brachypodium KQK19432
Barley HORVU0Hr1G003000.2 , HORVU0Hr1G003000.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
2 Sobic.001G288100 zinc-binding protein, putative, expressed -
3 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.001G526000 hydrolase, alpha/beta fold family protein, putative, expressed -
5 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
6 Sobic.001G024500 uncharacterized Cys-rich domain containing protein, putative, expressed -
7 Sobic.002G269400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
8 Sobic.004G110400 RING-H2 finger protein, putative, expressed -
9 Sobic.001G075000 lectin-like receptor kinase, putative, expressed -
10 Sobic.010G157500 zinc finger protein, putative, expressed -
11 Sobic.006G197800 zinc-binding protein, putative, expressed -
12 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
13 Sobic.001G144400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
14 Sobic.005G064600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.003G391100 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.006G174600 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
17 Sobic.008G002700 receptor protein kinase CRINKLY4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
18 Sobic.005G000100 monoglyceride lipase, putative, expressed -
19 Sobic.010G265800 tyrosine protein kinase domain containing protein, putative, expressed -
20 Sobic.003G296300 WRKY13, expressed -


Gene co-expression network
sample Sobic002G376000 Sobic002G376000 Sobic006G167800 Sobic006G167800 Sobic002G376000--Sobic006G167800 Sobic001G288100 Sobic001G288100 Sobic002G376000--Sobic001G288100 Sobic010G179800 Sobic010G179800 Sobic002G376000--Sobic010G179800 Sobic001G526000 Sobic001G526000 Sobic002G376000--Sobic001G526000 Sobic001G093900 Sobic001G093900 Sobic002G376000--Sobic001G093900 Sobic001G024500 Sobic001G024500 Sobic002G376000--Sobic001G024500 Sobic002G269400 Sobic002G269400 Sobic002G376000--Sobic002G269400 Sobic004G110400 Sobic004G110400 Sobic002G376000--Sobic004G110400 Sobic001G075000 Sobic001G075000 Sobic002G376000--Sobic001G075000 Sobic006G167800--Sobic001G526000 Sobic003G296300 Sobic003G296300 Sobic006G167800--Sobic003G296300 Sobic006G167800--Sobic004G110400 Sobic006G167800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G167800--Sobic010G157500 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic001G195100 Sobic001G195100 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic001G450500 Sobic001G450500 Sobic001G288100--Sobic001G450500 Sobic006G197800 Sobic006G197800 Sobic001G288100--Sobic006G197800 Sobic001G288100--Sobic002G376000 Sobic006G174600 Sobic006G174600 Sobic001G288100--Sobic006G174600 Sobic005G229400 Sobic005G229400 Sobic001G288100--Sobic005G229400 Sobic004G114500 Sobic004G114500 Sobic001G288100--Sobic004G114500 Sobic009G100500 Sobic009G100500 Sobic001G288100--Sobic009G100500 Sobic002G257100 Sobic002G257100 Sobic001G288100--Sobic002G257100 Sobic001G288100--Sobic001G526000 Sobic010G179800--Sobic002G376000 Sobic010G179800--Sobic002G269400 Sobic010G179800--Sobic001G024500 Sobic008G002700 Sobic008G002700 Sobic010G179800--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic010G179800--Sobic007G220700 Sobic004G083900 Sobic004G083900 Sobic010G179800--Sobic004G083900 Sobic003G331500 Sobic003G331500 Sobic010G179800--Sobic003G331500 Sobic001G435500 Sobic001G435500 Sobic010G179800--Sobic001G435500 Sobic009G110200 Sobic009G110200 Sobic010G179800--Sobic009G110200 Sobic001G526000--Sobic006G167800 Sobic001G526000--Sobic003G296300 Sobic001G088300 Sobic001G088300 Sobic001G526000--Sobic001G088300 Sobic001G526000--Sobic001G195100 Sobic001G526000--Sobic009G100500 Sobic001G314800 Sobic001G314800 Sobic001G526000--Sobic001G314800 Sobic006G259000 Sobic006G259000 Sobic001G526000--Sobic006G259000 Sobic007G090300 Sobic007G090300 Sobic001G526000--Sobic007G090300 Sobic001G526000--Sobic004G110400 Sobic001G093900--Sobic003G296300 Sobic001G530350 Sobic001G530350 Sobic001G093900--Sobic001G530350 Sobic001G093900--Sobic001G024500 Sobic001G182600 Sobic001G182600 Sobic001G093900--Sobic001G182600 Sobic001G093900--Sobic006G167800 Sobic001G093900--Sobic002G376000 Sobic001G093900--Sobic001G526000 Sobic001G093900--Sobic001G075000 Sobic003G013600 Sobic003G013600 Sobic001G093900--Sobic003G013600 Sobic001G024500--Sobic001G093900 Sobic001G024500--Sobic008G002700 Sobic001G024500--Sobic007G220700 Sobic001G024500--Sobic002G376000 Sobic001G024500--Sobic010G179800 Sobic003G075000 Sobic003G075000 Sobic001G024500--Sobic003G075000 Sobic001G024500--Sobic001G075000 Sobic005G161100 Sobic005G161100 Sobic001G024500--Sobic005G161100 Sobic001G024500--Sobic001G182600 Sobic002G269300 Sobic002G269300 Sobic002G269400--Sobic002G269300 Sobic002G269400--Sobic010G179800 Sobic002G269400--Sobic002G376000 Sobic002G269400--Sobic004G110400 Sobic008G018600 Sobic008G018600 Sobic002G269400--Sobic008G018600 Sobic002G269400--Sobic001G088300 Sobic002G269400--Sobic006G167800 Sobic002G269400--Sobic001G526000 Sobic005G063900 Sobic005G063900 Sobic002G269400--Sobic005G063900 Sobic004G110400--Sobic006G167800 Sobic004G110400--Sobic001G314800 Sobic004G110400--Sobic001G526000 Sobic004G333300 Sobic004G333300 Sobic004G110400--Sobic004G333300 Sobic005G155600 Sobic005G155600 Sobic004G110400--Sobic005G155600 Sobic004G110400--Sobic003G296300 Sobic004G110400--Sobic002G376000 Sobic004G110400--Sobic002G269400 Sobic001G345400 Sobic001G345400 Sobic004G110400--Sobic001G345400 Sobic008G142100 Sobic008G142100 Sobic001G075000--Sobic008G142100 Sobic001G075000--Sobic001G093900 Sobic001G075000--Sobic002G376000 Sobic001G075000--Sobic003G296300 Sobic001G319100 Sobic001G319100 Sobic001G075000--Sobic001G319100 Sobic001G075000--Sobic001G024500 Sobic002G193400 Sobic002G193400 Sobic001G075000--Sobic002G193400 Sobic001G075000--Sobic006G167800 Sobic001G075000--Sobic002G257100
Octagon: transcription factors


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