Gene annotation
Transcriptome id Sobic.001G093900.2,Sobic.001G093900.1
Synonym Sb01g008420
Functional annotation stem-specific protein TSJT1, putative, expressed
UniProt A0A1B6QI32 , A0A1B6QI34
Pfam PF13537
Panther DB PTHR11772 PTHR11772:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43830 : Aluminium induced protein with YGL and LRDR motifs
RAP-DB (Rice) LOC_Os03g53270.1 : stem-specific protein TSJT1, putative, expressed
MaizeGDB (Corn) Zm00025a008105
Brachypodium KQK13256
Barley -
Wheat TraesCS5A02G383200 , TraesCS5B02G387700 , TraesCS5D02G392600 , TraesCS5D02G392600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G093900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296300 WRKY13, expressed -
2 Sobic.001G530350 - -
3 Sobic.001G024500 uncharacterized Cys-rich domain containing protein, putative, expressed -
4 Sobic.001G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
6 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
7 Sobic.001G526000 hydrolase, alpha/beta fold family protein, putative, expressed -
8 Sobic.001G075000 lectin-like receptor kinase, putative, expressed -
9 Sobic.003G013600 expressed protein -
10 Sobic.006G246100 one cut domain family member 3, putative, expressed -
11 Sobic.005G161100 expressed protein -
12 Sobic.009G232266 - -
13 Sobic.001G285000 - -
14 Sobic.001G225600 expressed protein -
15 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
16 Sobic.010G157500 zinc finger protein, putative, expressed -
17 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
18 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
19 Sobic.003G085700 expressed protein -
20 Sobic.003G262100 expressed protein -


Gene co-expression network
sample Sobic001G093900 Sobic001G093900 Sobic003G296300 Sobic003G296300 Sobic001G093900--Sobic003G296300 Sobic001G530350 Sobic001G530350 Sobic001G093900--Sobic001G530350 Sobic001G024500 Sobic001G024500 Sobic001G093900--Sobic001G024500 Sobic001G182600 Sobic001G182600 Sobic001G093900--Sobic001G182600 Sobic006G167800 Sobic006G167800 Sobic001G093900--Sobic006G167800 Sobic002G376000 Sobic002G376000 Sobic001G093900--Sobic002G376000 Sobic001G526000 Sobic001G526000 Sobic001G093900--Sobic001G526000 Sobic001G075000 Sobic001G075000 Sobic001G093900--Sobic001G075000 Sobic003G013600 Sobic003G013600 Sobic001G093900--Sobic003G013600 Sobic001G345400 Sobic001G345400 Sobic003G296300--Sobic001G345400 Sobic006G246100 Sobic006G246100 Sobic003G296300--Sobic006G246100 Sobic004G101000 Sobic004G101000 Sobic003G296300--Sobic004G101000 Sobic003G296300--Sobic006G167800 Sobic003G296300--Sobic001G093900 Sobic010G157500 Sobic010G157500 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic006G097800 Sobic006G097800 Sobic001G530350--Sobic006G097800 Sobic001G526900 Sobic001G526900 Sobic001G530350--Sobic001G526900 Sobic001G530350--Sobic003G296300 Sobic001G530350--Sobic001G093900 Sobic001G530350--Sobic001G345400 Sobic009G100800 Sobic009G100800 Sobic001G530350--Sobic009G100800 Sobic001G225600 Sobic001G225600 Sobic001G530350--Sobic001G225600 Sobic001G530350--Sobic003G013600 Sobic001G530350--Sobic006G246100 Sobic001G024500--Sobic001G093900 Sobic008G002700 Sobic008G002700 Sobic001G024500--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic001G024500--Sobic007G220700 Sobic001G024500--Sobic002G376000 Sobic010G179800 Sobic010G179800 Sobic001G024500--Sobic010G179800 Sobic003G075000 Sobic003G075000 Sobic001G024500--Sobic003G075000 Sobic001G024500--Sobic001G075000 Sobic005G161100 Sobic005G161100 Sobic001G024500--Sobic005G161100 Sobic001G024500--Sobic001G182600 Sobic008G018600 Sobic008G018600 Sobic001G182600--Sobic008G018600 Sobic001G182600--Sobic001G093900 Sobic009G038200 Sobic009G038200 Sobic001G182600--Sobic009G038200 Sobic009G192100 Sobic009G192100 Sobic001G182600--Sobic009G192100 Sobic008G181300 Sobic008G181300 Sobic001G182600--Sobic008G181300 Sobic001G449800 Sobic001G449800 Sobic001G182600--Sobic001G449800 Sobic005G190900 Sobic005G190900 Sobic001G182600--Sobic005G190900 Sobic009G233900 Sobic009G233900 Sobic001G182600--Sobic009G233900 Sobic006G078500 Sobic006G078500 Sobic001G182600--Sobic006G078500 Sobic006G167800--Sobic001G526000 Sobic006G167800--Sobic003G296300 Sobic004G110400 Sobic004G110400 Sobic006G167800--Sobic004G110400 Sobic006G167800--Sobic002G376000 Sobic006G167800--Sobic010G157500 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic002G376000--Sobic006G167800 Sobic001G288100 Sobic001G288100 Sobic002G376000--Sobic001G288100 Sobic002G376000--Sobic010G179800 Sobic002G376000--Sobic001G526000 Sobic002G376000--Sobic001G093900 Sobic002G376000--Sobic001G024500 Sobic002G269400 Sobic002G269400 Sobic002G376000--Sobic002G269400 Sobic002G376000--Sobic004G110400 Sobic002G376000--Sobic001G075000 Sobic001G526000--Sobic006G167800 Sobic001G526000--Sobic003G296300 Sobic001G088300 Sobic001G088300 Sobic001G526000--Sobic001G088300 Sobic001G526000--Sobic001G195100 Sobic009G100500 Sobic009G100500 Sobic001G526000--Sobic009G100500 Sobic001G314800 Sobic001G314800 Sobic001G526000--Sobic001G314800 Sobic006G259000 Sobic006G259000 Sobic001G526000--Sobic006G259000 Sobic007G090300 Sobic007G090300 Sobic001G526000--Sobic007G090300 Sobic001G526000--Sobic004G110400 Sobic008G142100 Sobic008G142100 Sobic001G075000--Sobic008G142100 Sobic001G075000--Sobic001G093900 Sobic001G075000--Sobic002G376000 Sobic001G075000--Sobic003G296300 Sobic001G319100 Sobic001G319100 Sobic001G075000--Sobic001G319100 Sobic001G075000--Sobic001G024500 Sobic002G193400 Sobic002G193400 Sobic001G075000--Sobic002G193400 Sobic001G075000--Sobic006G167800 Sobic002G257100 Sobic002G257100 Sobic001G075000--Sobic002G257100 Sobic003G123300 Sobic003G123300 Sobic003G013600--Sobic003G123300 Sobic009G080200 Sobic009G080200 Sobic003G013600--Sobic009G080200 Sobic003G085700 Sobic003G085700 Sobic003G013600--Sobic003G085700 Sobic003G013600--Sobic001G225600 Sobic003G013600--Sobic001G530350 Sobic010G267000 Sobic010G267000 Sobic003G013600--Sobic010G267000 Sobic003G013600--Sobic003G296300 Sobic001G293800 Sobic001G293800 Sobic003G013600--Sobic001G293800 Sobic001G225400 Sobic001G225400 Sobic003G013600--Sobic001G225400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.