Gene annotation
Transcriptome id Sobic.001G530350.1
Synonym -
Functional annotation -
UniProt A0A1Z5SC88
Pfam PF01476
Panther DB PTHR33648 PTHR33648:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G62150 : peptidoglycan-binding LysM domain-containing protein
RAP-DB (Rice) LOC_Os03g02685.1 : lysM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000251 , Zm00025a003092
Brachypodium KQJ84127
Barley HORVU1Hr1G048910.1 , HORVU2Hr1G094730.2 , HORVU2Hr1G094730.1 , HORVU1Hr1G048920.1 , HORVU1Hr1G048920.2 , HORVU4Hr1G085870.1 , HORVU1Hr1G048930.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G097800 anthocyanin 5-O-glucosyltransferase, putative, expressed -
2 Sobic.001G526900 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
3 Sobic.003G296300 WRKY13, expressed -
4 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
5 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
6 Sobic.009G100800 expressed protein -
7 Sobic.001G225600 expressed protein -
8 Sobic.003G013600 expressed protein -
9 Sobic.006G246100 one cut domain family member 3, putative, expressed -
10 Sobic.001G285000 - -
11 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
12 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
13 Sobic.003G299800 RING-H2 finger protein, putative, expressed K19038: E3 ubiquitin-protein ligase ATL41
14 Sobic.003G262100 expressed protein -
15 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
16 Sobic.001G225200 expressed protein -
17 Sobic.001G225300 - -
18 Sobic.010G052600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.004G352900 expressed protein -
20 Sobic.009G064000 expressed protein -


Gene co-expression network
sample Sobic001G530350 Sobic001G530350 Sobic006G097800 Sobic006G097800 Sobic001G530350--Sobic006G097800 Sobic001G526900 Sobic001G526900 Sobic001G530350--Sobic001G526900 Sobic003G296300 Sobic003G296300 Sobic001G530350--Sobic003G296300 Sobic001G093900 Sobic001G093900 Sobic001G530350--Sobic001G093900 Sobic001G345400 Sobic001G345400 Sobic001G530350--Sobic001G345400 Sobic009G100800 Sobic009G100800 Sobic001G530350--Sobic009G100800 Sobic001G225600 Sobic001G225600 Sobic001G530350--Sobic001G225600 Sobic003G013600 Sobic003G013600 Sobic001G530350--Sobic003G013600 Sobic006G246100 Sobic006G246100 Sobic001G530350--Sobic006G246100 Sobic006G097800--Sobic001G530350 Sobic006G097800--Sobic001G526900 Sobic001G144400 Sobic001G144400 Sobic006G097800--Sobic001G144400 Sobic001G225200 Sobic001G225200 Sobic006G097800--Sobic001G225200 Sobic006G097800--Sobic009G100800 Sobic006G190000 Sobic006G190000 Sobic006G097800--Sobic006G190000 Sobic001G223100 Sobic001G223100 Sobic006G097800--Sobic001G223100 Sobic003G406900 Sobic003G406900 Sobic006G097800--Sobic003G406900 Sobic006G097800--Sobic001G225600 Sobic001G526900--Sobic001G530350 Sobic002G427900 Sobic002G427900 Sobic001G526900--Sobic002G427900 Sobic004G352900 Sobic004G352900 Sobic001G526900--Sobic004G352900 Sobic010G066300 Sobic010G066300 Sobic001G526900--Sobic010G066300 Sobic001G321500 Sobic001G321500 Sobic001G526900--Sobic001G321500 Sobic001G526900--Sobic006G097800 Sobic001G526900--Sobic009G100800 Sobic001G526900--Sobic003G296300 Sobic007G188701 Sobic007G188701 Sobic001G526900--Sobic007G188701 Sobic003G296300--Sobic001G345400 Sobic003G296300--Sobic006G246100 Sobic004G101000 Sobic004G101000 Sobic003G296300--Sobic004G101000 Sobic006G167800 Sobic006G167800 Sobic003G296300--Sobic006G167800 Sobic003G296300--Sobic001G093900 Sobic010G157500 Sobic010G157500 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic001G093900--Sobic003G296300 Sobic001G093900--Sobic001G530350 Sobic001G024500 Sobic001G024500 Sobic001G093900--Sobic001G024500 Sobic001G182600 Sobic001G182600 Sobic001G093900--Sobic001G182600 Sobic001G093900--Sobic006G167800 Sobic002G376000 Sobic002G376000 Sobic001G093900--Sobic002G376000 Sobic001G093900--Sobic001G526000 Sobic001G075000 Sobic001G075000 Sobic001G093900--Sobic001G075000 Sobic001G093900--Sobic003G013600 Sobic001G345400--Sobic003G296300 Sobic001G345400--Sobic004G101000 Sobic001G345400--Sobic009G038000 Sobic005G155600 Sobic005G155600 Sobic001G345400--Sobic005G155600 Sobic001G345400--Sobic006G246100 Sobic004G333300 Sobic004G333300 Sobic001G345400--Sobic004G333300 Sobic001G345400--Sobic001G530350 Sobic009G192100 Sobic009G192100 Sobic001G345400--Sobic009G192100 Sobic008G038100 Sobic008G038100 Sobic001G345400--Sobic008G038100 Sobic009G064000 Sobic009G064000 Sobic009G100800--Sobic009G064000 Sobic002G254200 Sobic002G254200 Sobic009G100800--Sobic002G254200 Sobic009G100800--Sobic001G530350 Sobic001G225300 Sobic001G225300 Sobic009G100800--Sobic001G225300 Sobic006G269200 Sobic006G269200 Sobic009G100800--Sobic006G269200 Sobic009G100800--Sobic001G225600 Sobic002G421600 Sobic002G421600 Sobic009G100800--Sobic002G421600 Sobic010G030401 Sobic010G030401 Sobic009G100800--Sobic010G030401 Sobic009G100800--Sobic003G013600 Sobic001G225600--Sobic001G225300 Sobic001G225600--Sobic001G530350 Sobic001G225600--Sobic003G013600 Sobic001G225600--Sobic009G100800 Sobic003G123300 Sobic003G123300 Sobic001G225600--Sobic003G123300 Sobic001G225600--Sobic001G225200 Sobic003G299800 Sobic003G299800 Sobic001G225600--Sobic003G299800 Sobic003G400200 Sobic003G400200 Sobic001G225600--Sobic003G400200 Sobic001G225600--Sobic002G421600 Sobic003G013600--Sobic003G123300 Sobic009G080200 Sobic009G080200 Sobic003G013600--Sobic009G080200 Sobic003G085700 Sobic003G085700 Sobic003G013600--Sobic003G085700 Sobic003G013600--Sobic001G225600 Sobic003G013600--Sobic001G530350 Sobic010G267000 Sobic010G267000 Sobic003G013600--Sobic010G267000 Sobic003G013600--Sobic003G296300 Sobic001G293800 Sobic001G293800 Sobic003G013600--Sobic001G293800 Sobic001G225400 Sobic001G225400 Sobic003G013600--Sobic001G225400 Sobic006G246100--Sobic003G296300 Sobic005G080200 Sobic005G080200 Sobic006G246100--Sobic005G080200 Sobic010G194300 Sobic010G194300 Sobic006G246100--Sobic010G194300 Sobic002G319100 Sobic002G319100 Sobic006G246100--Sobic002G319100 Sobic006G246100--Sobic001G345400 Sobic004G114400 Sobic004G114400 Sobic006G246100--Sobic004G114400 Sobic004G010300 Sobic004G010300 Sobic006G246100--Sobic004G010300 Sobic010G194900 Sobic010G194900 Sobic006G246100--Sobic010G194900 Sobic004G195000 Sobic004G195000 Sobic006G246100--Sobic004G195000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.