Gene annotation
Transcriptome id Sobic.003G299800.1
Synonym Sb03g034930
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5XK75
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF132
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K19038; E3 ubiquitin-protein ligase ATL41
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G42360 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g55110.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a027529 , Zm00025a040028
Brachypodium -
Barley HORVU3Hr1G072730.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G225600 expressed protein -
2 Sobic.004G352900 expressed protein -
3 Sobic.002G427900 wound-induced protein WI12, putative, expressed -
4 Sobic.001G530350 - -
5 Sobic.001G285000 - -
6 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
7 Sobic.009G249000 CAMK_CAMK_like.5 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.009G100800 expressed protein -
9 Sobic.001G526900 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
10 Sobic.005G000100 monoglyceride lipase, putative, expressed -
11 Sobic.001G343900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
12 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
13 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
14 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
15 Sobic.005G107300 expressed protein -
16 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G014000 serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed -
18 Sobic.006G138500 wall-associated receptor kinase-like 20 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
19 Sobic.004G010300 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
20 Sobic.009G156300 pleckstrin homology domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G299800 Sobic003G299800 Sobic001G225600 Sobic001G225600 Sobic003G299800--Sobic001G225600 Sobic004G352900 Sobic004G352900 Sobic003G299800--Sobic004G352900 Sobic002G427900 Sobic002G427900 Sobic003G299800--Sobic002G427900 Sobic001G530350 Sobic001G530350 Sobic003G299800--Sobic001G530350 Sobic001G285000 Sobic001G285000 Sobic003G299800--Sobic001G285000 Sobic001G410100 Sobic001G410100 Sobic003G299800--Sobic001G410100 Sobic009G249000 Sobic009G249000 Sobic003G299800--Sobic009G249000 Sobic009G100800 Sobic009G100800 Sobic003G299800--Sobic009G100800 Sobic001G526900 Sobic001G526900 Sobic003G299800--Sobic001G526900 Sobic001G225300 Sobic001G225300 Sobic001G225600--Sobic001G225300 Sobic001G225600--Sobic001G530350 Sobic003G013600 Sobic003G013600 Sobic001G225600--Sobic003G013600 Sobic001G225600--Sobic009G100800 Sobic003G123300 Sobic003G123300 Sobic001G225600--Sobic003G123300 Sobic001G225200 Sobic001G225200 Sobic001G225600--Sobic001G225200 Sobic001G225600--Sobic003G299800 Sobic003G400200 Sobic003G400200 Sobic001G225600--Sobic003G400200 Sobic002G421600 Sobic002G421600 Sobic001G225600--Sobic002G421600 Sobic004G352900--Sobic002G427900 Sobic009G156300 Sobic009G156300 Sobic004G352900--Sobic009G156300 Sobic004G014000 Sobic004G014000 Sobic004G352900--Sobic004G014000 Sobic010G066300 Sobic010G066300 Sobic004G352900--Sobic010G066300 Sobic002G254650 Sobic002G254650 Sobic004G352900--Sobic002G254650 Sobic001G536500 Sobic001G536500 Sobic004G352900--Sobic001G536500 Sobic002G117200 Sobic002G117200 Sobic004G352900--Sobic002G117200 Sobic010G029400 Sobic010G029400 Sobic004G352900--Sobic010G029400 Sobic009G131100 Sobic009G131100 Sobic004G352900--Sobic009G131100 Sobic002G427900--Sobic004G352900 Sobic002G427900--Sobic010G066300 Sobic002G427900--Sobic001G526900 Sobic002G427900--Sobic009G156300 Sobic002G427900--Sobic004G014000 Sobic002G427900--Sobic001G285000 Sobic002G427900--Sobic003G299800 Sobic003G116700 Sobic003G116700 Sobic002G427900--Sobic003G116700 Sobic002G427900--Sobic002G254650 Sobic006G097800 Sobic006G097800 Sobic001G530350--Sobic006G097800 Sobic001G530350--Sobic001G526900 Sobic003G296300 Sobic003G296300 Sobic001G530350--Sobic003G296300 Sobic001G093900 Sobic001G093900 Sobic001G530350--Sobic001G093900 Sobic001G345400 Sobic001G345400 Sobic001G530350--Sobic001G345400 Sobic001G530350--Sobic009G100800 Sobic001G530350--Sobic001G225600 Sobic001G530350--Sobic003G013600 Sobic006G246100 Sobic006G246100 Sobic001G530350--Sobic006G246100 Sobic001G285000--Sobic009G156300 Sobic001G285000--Sobic004G352900 Sobic001G285000--Sobic010G066300 Sobic001G321500 Sobic001G321500 Sobic001G285000--Sobic001G321500 Sobic005G229400 Sobic005G229400 Sobic001G285000--Sobic005G229400 Sobic001G285000--Sobic002G117200 Sobic001G285000--Sobic001G410100 Sobic001G285000--Sobic003G296300 Sobic001G285000--Sobic001G530350 Sobic001G287600 Sobic001G287600 Sobic001G410100--Sobic001G287600 Sobic002G207300 Sobic002G207300 Sobic001G410100--Sobic002G207300 Sobic003G341100 Sobic003G341100 Sobic001G410100--Sobic003G341100 Sobic007G011000 Sobic007G011000 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic002G118600 Sobic002G118600 Sobic001G410100--Sobic002G118600 Sobic009G044400 Sobic009G044400 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic004G065900 Sobic004G065900 Sobic001G410100--Sobic004G065900 Sobic005G092800 Sobic005G092800 Sobic009G249000--Sobic005G092800 Sobic004G157800 Sobic004G157800 Sobic009G249000--Sobic004G157800 Sobic004G172700 Sobic004G172700 Sobic009G249000--Sobic004G172700 Sobic009G249000--Sobic004G352900 Sobic010G062800 Sobic010G062800 Sobic009G249000--Sobic010G062800 Sobic009G249000--Sobic004G014000 Sobic001G403700 Sobic001G403700 Sobic009G249000--Sobic001G403700 Sobic002G078400 Sobic002G078400 Sobic009G249000--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic009G249000--Sobic008G132800 Sobic009G064000 Sobic009G064000 Sobic009G100800--Sobic009G064000 Sobic002G254200 Sobic002G254200 Sobic009G100800--Sobic002G254200 Sobic009G100800--Sobic001G530350 Sobic009G100800--Sobic001G225300 Sobic006G269200 Sobic006G269200 Sobic009G100800--Sobic006G269200 Sobic009G100800--Sobic001G225600 Sobic009G100800--Sobic002G421600 Sobic010G030401 Sobic010G030401 Sobic009G100800--Sobic010G030401 Sobic009G100800--Sobic003G013600 Sobic001G526900--Sobic001G530350 Sobic001G526900--Sobic002G427900 Sobic001G526900--Sobic004G352900 Sobic001G526900--Sobic010G066300 Sobic001G526900--Sobic001G321500 Sobic001G526900--Sobic006G097800 Sobic001G526900--Sobic009G100800 Sobic001G526900--Sobic003G296300 Sobic007G188701 Sobic007G188701 Sobic001G526900--Sobic007G188701
Octagon: transcription factors


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