Gene annotation
Transcriptome id Sobic.010G066300.1
Synonym Sb10g005730
Functional annotation OsRCI2-8 - Putative low temperature and salt responsive protein, expressed
UniProt C5Z5T3
Pfam PF01679
Panther DB PTHR21659
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G24040 : Low temperature and salt responsive protein family
RAP-DB (Rice) LOC_Os06g08564.1 : OsRCI2-8 - Putative low temperature and salt responsive protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK19263
Barley HORVU7Hr1G030530.2 , HORVU7Hr1G030530.3 , HORVU7Hr1G030530.1 , HORVU7Hr1G030570.1
Wheat TraesCS7A02G149300 , TraesCS7D02G150900 , TraesCS7D02G151000 , TraesCS7B02G053000
Populus -


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cDNA sequences
Sobic.010G066300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G427900 wound-induced protein WI12, putative, expressed -
2 Sobic.004G352900 expressed protein -
3 Sobic.009G156300 pleckstrin homology domain-containing protein, putative, expressed -
4 Sobic.010G021100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K12734: peptidyl-prolyl cis-trans isomerase-like 3
5 Sobic.001G285000 - -
6 Sobic.010G045833 - -
7 Sobic.002G254650 - -
8 Sobic.001G526900 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
9 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
10 Sobic.007G136700 YGL010w, putative, expressed -
11 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
12 Sobic.001G530350 - -
13 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
14 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
15 Sobic.009G252800 expressed protein -
16 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G014000 serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed -
18 Sobic.010G047400 "HGW(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659929)@proline-rich cell wall protein-like, putative, expressed -
19 Sobic.003G358400 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K09591: steroid 5-alpha-reductase
20 Sobic.002G123200 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4


Gene co-expression network
sample Sobic010G066300 Sobic010G066300 Sobic002G427900 Sobic002G427900 Sobic010G066300--Sobic002G427900 Sobic004G352900 Sobic004G352900 Sobic010G066300--Sobic004G352900 Sobic009G156300 Sobic009G156300 Sobic010G066300--Sobic009G156300 Sobic010G021100 Sobic010G021100 Sobic010G066300--Sobic010G021100 Sobic001G285000 Sobic001G285000 Sobic010G066300--Sobic001G285000 Sobic010G045833 Sobic010G045833 Sobic010G066300--Sobic010G045833 Sobic002G254650 Sobic002G254650 Sobic010G066300--Sobic002G254650 Sobic001G526900 Sobic001G526900 Sobic010G066300--Sobic001G526900 Sobic003G317200 Sobic003G317200 Sobic010G066300--Sobic003G317200 Sobic002G427900--Sobic004G352900 Sobic002G427900--Sobic010G066300 Sobic002G427900--Sobic001G526900 Sobic002G427900--Sobic009G156300 Sobic004G014000 Sobic004G014000 Sobic002G427900--Sobic004G014000 Sobic002G427900--Sobic001G285000 Sobic003G299800 Sobic003G299800 Sobic002G427900--Sobic003G299800 Sobic003G116700 Sobic003G116700 Sobic002G427900--Sobic003G116700 Sobic002G427900--Sobic002G254650 Sobic004G352900--Sobic002G427900 Sobic004G352900--Sobic009G156300 Sobic004G352900--Sobic004G014000 Sobic004G352900--Sobic010G066300 Sobic004G352900--Sobic002G254650 Sobic001G536500 Sobic001G536500 Sobic004G352900--Sobic001G536500 Sobic002G117200 Sobic002G117200 Sobic004G352900--Sobic002G117200 Sobic010G029400 Sobic010G029400 Sobic004G352900--Sobic010G029400 Sobic009G131100 Sobic009G131100 Sobic004G352900--Sobic009G131100 Sobic009G156300--Sobic002G117200 Sobic009G156300--Sobic004G352900 Sobic009G156300--Sobic001G285000 Sobic009G156300--Sobic010G066300 Sobic009G156300--Sobic009G131100 Sobic004G060600 Sobic004G060600 Sobic009G156300--Sobic004G060600 Sobic009G156300--Sobic002G254650 Sobic009G156300--Sobic002G427900 Sobic010G065400 Sobic010G065400 Sobic009G156300--Sobic010G065400 Sobic001G037000 Sobic001G037000 Sobic010G021100--Sobic001G037000 Sobic010G021100--Sobic010G066300 Sobic004G247200 Sobic004G247200 Sobic010G021100--Sobic004G247200 Sobic001G204900 Sobic001G204900 Sobic010G021100--Sobic001G204900 Sobic010G217900 Sobic010G217900 Sobic010G021100--Sobic010G217900 Sobic009G222600 Sobic009G222600 Sobic010G021100--Sobic009G222600 Sobic002G205300 Sobic002G205300 Sobic010G021100--Sobic002G205300 Sobic001G047700 Sobic001G047700 Sobic010G021100--Sobic001G047700 Sobic001G422900 Sobic001G422900 Sobic010G021100--Sobic001G422900 Sobic001G285000--Sobic009G156300 Sobic001G285000--Sobic004G352900 Sobic001G285000--Sobic010G066300 Sobic001G321500 Sobic001G321500 Sobic001G285000--Sobic001G321500 Sobic005G229400 Sobic005G229400 Sobic001G285000--Sobic005G229400 Sobic001G285000--Sobic002G117200 Sobic001G410100 Sobic001G410100 Sobic001G285000--Sobic001G410100 Sobic003G296300 Sobic003G296300 Sobic001G285000--Sobic003G296300 Sobic001G530350 Sobic001G530350 Sobic001G285000--Sobic001G530350 Sobic010G045833--Sobic010G066300 Sobic006G207500 Sobic006G207500 Sobic010G045833--Sobic006G207500 Sobic007G136700 Sobic007G136700 Sobic010G045833--Sobic007G136700 Sobic009G031200 Sobic009G031200 Sobic010G045833--Sobic009G031200 Sobic005G010500 Sobic005G010500 Sobic010G045833--Sobic005G010500 Sobic007G079700 Sobic007G079700 Sobic010G045833--Sobic007G079700 Sobic010G045833--Sobic009G156300 Sobic003G361500 Sobic003G361500 Sobic010G045833--Sobic003G361500 Sobic002G365100 Sobic002G365100 Sobic010G045833--Sobic002G365100 Sobic002G254650--Sobic004G352900 Sobic008G132800 Sobic008G132800 Sobic002G254650--Sobic008G132800 Sobic002G254650--Sobic010G065400 Sobic004G012800 Sobic004G012800 Sobic002G254650--Sobic004G012800 Sobic010G054200 Sobic010G054200 Sobic002G254650--Sobic010G054200 Sobic002G254650--Sobic010G029400 Sobic005G157200 Sobic005G157200 Sobic002G254650--Sobic005G157200 Sobic010G099200 Sobic010G099200 Sobic002G254650--Sobic010G099200 Sobic006G052400 Sobic006G052400 Sobic002G254650--Sobic006G052400 Sobic001G526900--Sobic001G530350 Sobic001G526900--Sobic002G427900 Sobic001G526900--Sobic004G352900 Sobic001G526900--Sobic010G066300 Sobic001G526900--Sobic001G321500 Sobic006G097800 Sobic006G097800 Sobic001G526900--Sobic006G097800 Sobic009G100800 Sobic009G100800 Sobic001G526900--Sobic009G100800 Sobic001G526900--Sobic003G296300 Sobic007G188701 Sobic007G188701 Sobic001G526900--Sobic007G188701 Sobic010G055500 Sobic010G055500 Sobic003G317200--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic003G317200--Sobic010G071200 Sobic006G109300 Sobic006G109300 Sobic003G317200--Sobic006G109300 Sobic008G142700 Sobic008G142700 Sobic003G317200--Sobic008G142700 Sobic001G206000 Sobic001G206000 Sobic003G317200--Sobic001G206000 Sobic001G441600 Sobic001G441600 Sobic003G317200--Sobic001G441600 Sobic004G231400 Sobic004G231400 Sobic003G317200--Sobic004G231400 Sobic001G149700 Sobic001G149700 Sobic003G317200--Sobic001G149700 Sobic001G138300 Sobic001G138300 Sobic003G317200--Sobic001G138300
Octagon: transcription factors


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