Gene annotation
Transcriptome id Sobic.010G021100.1
Synonym Sb10g002010
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt C5Z3A7
Pfam PF00160
Panther DB PTHR11071
NCBI CDD KOG0884; Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase
KEGG Orthology K12734; peptidyl-prolyl cis-trans isomerase-like 3
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT1G01940 : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
RAP-DB (Rice) LOC_Os06g04000.1 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a050170 , Zm00025a041377
Brachypodium KQK19712 , PNT76593
Barley HORVU7Hr1G012940.6 , HORVU7Hr1G012940.5 , HORVU7Hr1G012940.4 , HORVU7Hr1G012940.3
Wheat TraesCS4A02G423000 , TraesCS7D02G060700 , TraesCS7A02G066500
Populus -


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cDNA sequences
Sobic.010G021100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G037000 PHD finger protein, putative, expressed -
2 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
3 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
4 Sobic.001G204900 cystathionin beta synthase protein, putative, expressed -
5 Sobic.010G217900 diphthamide biosynthesis protein 3, putative, expressed K15455: DPH3, diphthamide biosynthesis protein 3
6 Sobic.009G222600 expressed protein -
7 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
8 Sobic.001G047700 expressed protein -
9 Sobic.001G422900 zinc finger family protein, putative, expressed -
10 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
11 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
12 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
13 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
14 Sobic.001G536500 expressed protein -
15 Sobic.004G259600 slowmo homolog, putative, expressed -
16 Sobic.007G038800 expressed protein -
17 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
18 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
19 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
20 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A


Gene co-expression network
sample Sobic010G021100 Sobic010G021100 Sobic001G037000 Sobic001G037000 Sobic010G021100--Sobic001G037000 Sobic010G066300 Sobic010G066300 Sobic010G021100--Sobic010G066300 Sobic004G247200 Sobic004G247200 Sobic010G021100--Sobic004G247200 Sobic001G204900 Sobic001G204900 Sobic010G021100--Sobic001G204900 Sobic010G217900 Sobic010G217900 Sobic010G021100--Sobic010G217900 Sobic009G222600 Sobic009G222600 Sobic010G021100--Sobic009G222600 Sobic002G205300 Sobic002G205300 Sobic010G021100--Sobic002G205300 Sobic001G047700 Sobic001G047700 Sobic010G021100--Sobic001G047700 Sobic001G422900 Sobic001G422900 Sobic010G021100--Sobic001G422900 Sobic003G249800 Sobic003G249800 Sobic001G037000--Sobic003G249800 Sobic003G063200 Sobic003G063200 Sobic001G037000--Sobic003G063200 Sobic001G037000--Sobic001G422900 Sobic010G204600 Sobic010G204600 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic009G016201 Sobic009G016201 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic001G037000--Sobic002G205300 Sobic003G181500 Sobic003G181500 Sobic001G037000--Sobic003G181500 Sobic002G427900 Sobic002G427900 Sobic010G066300--Sobic002G427900 Sobic004G352900 Sobic004G352900 Sobic010G066300--Sobic004G352900 Sobic009G156300 Sobic009G156300 Sobic010G066300--Sobic009G156300 Sobic010G066300--Sobic010G021100 Sobic001G285000 Sobic001G285000 Sobic010G066300--Sobic001G285000 Sobic010G045833 Sobic010G045833 Sobic010G066300--Sobic010G045833 Sobic002G254650 Sobic002G254650 Sobic010G066300--Sobic002G254650 Sobic001G526900 Sobic001G526900 Sobic010G066300--Sobic001G526900 Sobic003G317200 Sobic003G317200 Sobic010G066300--Sobic003G317200 Sobic004G247200--Sobic003G063200 Sobic005G028700 Sobic005G028700 Sobic004G247200--Sobic005G028700 Sobic004G259600 Sobic004G259600 Sobic004G247200--Sobic004G259600 Sobic001G055600 Sobic001G055600 Sobic004G247200--Sobic001G055600 Sobic004G247200--Sobic010G204600 Sobic004G065500 Sobic004G065500 Sobic004G247200--Sobic004G065500 Sobic009G183300 Sobic009G183300 Sobic004G247200--Sobic009G183300 Sobic004G247200--Sobic001G067601 Sobic002G348100 Sobic002G348100 Sobic004G247200--Sobic002G348100 Sobic006G263600 Sobic006G263600 Sobic001G204900--Sobic006G263600 Sobic003G324400 Sobic003G324400 Sobic001G204900--Sobic003G324400 Sobic010G223600 Sobic010G223600 Sobic001G204900--Sobic010G223600 Sobic001G204900--Sobic010G204600 Sobic002G405600 Sobic002G405600 Sobic001G204900--Sobic002G405600 Sobic004G169200 Sobic004G169200 Sobic001G204900--Sobic004G169200 Sobic009G238500 Sobic009G238500 Sobic001G204900--Sobic009G238500 Sobic001G204900--Sobic001G422900 Sobic001G295700 Sobic001G295700 Sobic001G204900--Sobic001G295700 Sobic010G217900--Sobic001G067601 Sobic001G019900 Sobic001G019900 Sobic010G217900--Sobic001G019900 Sobic005G228000 Sobic005G228000 Sobic010G217900--Sobic005G228000 Sobic001G533300 Sobic001G533300 Sobic010G217900--Sobic001G533300 Sobic010G217900--Sobic004G247200 Sobic010G217900--Sobic001G037000 Sobic003G162700 Sobic003G162700 Sobic010G217900--Sobic003G162700 Sobic004G177700 Sobic004G177700 Sobic010G217900--Sobic004G177700 Sobic010G217900--Sobic005G028700 Sobic009G222600--Sobic001G055600 Sobic009G222600--Sobic010G204600 Sobic001G095300 Sobic001G095300 Sobic009G222600--Sobic001G095300 Sobic009G222600--Sobic001G422900 Sobic002G245800 Sobic002G245800 Sobic009G222600--Sobic002G245800 Sobic009G222600--Sobic004G247200 Sobic009G222600--Sobic001G204900 Sobic001G192600 Sobic001G192600 Sobic009G222600--Sobic001G192600 Sobic006G158266 Sobic006G158266 Sobic009G222600--Sobic006G158266 Sobic002G205300--Sobic001G037000 Sobic005G103900 Sobic005G103900 Sobic002G205300--Sobic005G103900 Sobic002G282400 Sobic002G282400 Sobic002G205300--Sobic002G282400 Sobic002G205300--Sobic001G422900 Sobic005G229700 Sobic005G229700 Sobic002G205300--Sobic005G229700 Sobic007G107000 Sobic007G107000 Sobic002G205300--Sobic007G107000 Sobic002G205300--Sobic009G016201 Sobic002G205300--Sobic003G249800 Sobic009G070400 Sobic009G070400 Sobic002G205300--Sobic009G070400 Sobic001G047700--Sobic001G037000 Sobic001G047700--Sobic002G205300 Sobic001G047700--Sobic005G229700 Sobic002G068300 Sobic002G068300 Sobic001G047700--Sobic002G068300 Sobic001G047700--Sobic001G067601 Sobic002G261800 Sobic002G261800 Sobic001G047700--Sobic002G261800 Sobic001G223100 Sobic001G223100 Sobic001G047700--Sobic001G223100 Sobic001G536500 Sobic001G536500 Sobic001G047700--Sobic001G536500 Sobic001G399100 Sobic001G399100 Sobic001G047700--Sobic001G399100 Sobic001G422900--Sobic002G245800 Sobic001G422900--Sobic010G204600 Sobic001G422900--Sobic001G037000 Sobic001G422900--Sobic001G095300 Sobic001G422900--Sobic003G181500 Sobic001G422900--Sobic003G249800 Sobic001G422900--Sobic005G229700 Sobic002G211900 Sobic002G211900 Sobic001G422900--Sobic002G211900 Sobic001G422900--Sobic002G405600
Octagon: transcription factors


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