Gene annotation
Transcriptome id Sobic.002G068300.1
Synonym ATVAMP725, Sb02g005730, VAMP725
Functional annotation vesicle-associated membrane protein, putative, expressed
UniProt C5XCJ4
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF87
NCBI CDD KOG0859; Synaptobrevin/VAMP-like protein
KEGG Orthology K08511; vesicle-associated membrane protein 72
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G04760 : vesicle-associated membrane protein 726
RAP-DB (Rice) LOC_Os07g09600.1 : vesicle-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a016026 , Zm00025a008615 , Zm00025a045302 , Zm00025a016540
Brachypodium KQK20466 , KQK12635 , KQK12634
Barley HORVU5Hr1G107510.2 , HORVU5Hr1G107510.1
Wheat TraesCS4D02G280300 , TraesCS5A02G449900 , TraesCS4B02G281700 , TraesCS4A02G021800 , TraesCS3B02G193500 , TraesCS4A02G021800 , TraesCS5D02G459900 , TraesCS5B02G457700 , TraesCS4B02G281700
Populus PNT52773 , PNT52772 , PNT52775 , PNT52774 , PNT46189 , PNT46188 , PNT46187


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cDNA sequences
Sobic.002G068300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
2 Sobic.010G228600 LSM domain containing protein, expressed -
3 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
4 Sobic.006G256500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.010G144400 glycosyltransferase, putative, expressed -
6 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
7 Sobic.002G282400 expressed protein -
8 Sobic.001G389400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
9 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
10 Sobic.001G037000 PHD finger protein, putative, expressed -
11 Sobic.010G039800 expressed protein -
12 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
13 Sobic.001G047700 expressed protein -
14 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
15 Sobic.007G038800 expressed protein -
16 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
17 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
18 Sobic.006G141500 expressed protein -
19 Sobic.008G161000 protein kinase domain containing protein, expressed -
20 Sobic.003G379800 armadillo/beta-catenin repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic002G068300 Sobic002G068300 Sobic009G036900 Sobic009G036900 Sobic002G068300--Sobic009G036900 Sobic010G228600 Sobic010G228600 Sobic002G068300--Sobic010G228600 Sobic009G016201 Sobic009G016201 Sobic002G068300--Sobic009G016201 Sobic006G256500 Sobic006G256500 Sobic002G068300--Sobic006G256500 Sobic010G144400 Sobic010G144400 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic009G036900--Sobic002G068300 Sobic009G034400 Sobic009G034400 Sobic009G036900--Sobic009G034400 Sobic009G036900--Sobic006G256500 Sobic003G024800 Sobic003G024800 Sobic009G036900--Sobic003G024800 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic010G071200 Sobic010G071200 Sobic009G036900--Sobic010G071200 Sobic001G424500 Sobic001G424500 Sobic009G036900--Sobic001G424500 Sobic010G228600--Sobic009G036900 Sobic010G228600--Sobic002G068300 Sobic001G056700 Sobic001G056700 Sobic010G228600--Sobic001G056700 Sobic001G471900 Sobic001G471900 Sobic010G228600--Sobic001G471900 Sobic010G228600--Sobic010G144400 Sobic010G228600--Sobic010G071200 Sobic010G228600--Sobic009G034400 Sobic001G149700 Sobic001G149700 Sobic010G228600--Sobic001G149700 Sobic004G164500 Sobic004G164500 Sobic010G228600--Sobic004G164500 Sobic002G263800 Sobic002G263800 Sobic009G016201--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic009G016201--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic010G029400 Sobic010G029400 Sobic009G016201--Sobic010G029400 Sobic006G256500--Sobic009G036900 Sobic006G256500--Sobic002G068300 Sobic004G248800 Sobic004G248800 Sobic006G256500--Sobic004G248800 Sobic007G163700 Sobic007G163700 Sobic006G256500--Sobic007G163700 Sobic006G256500--Sobic001G529000 Sobic006G256500--Sobic010G039800 Sobic006G256500--Sobic009G016201 Sobic001G162000 Sobic001G162000 Sobic006G256500--Sobic001G162000 Sobic010G243200 Sobic010G243200 Sobic006G256500--Sobic010G243200 Sobic010G144400--Sobic002G068300 Sobic010G144400--Sobic001G056700 Sobic010G144400--Sobic010G228600 Sobic010G144400--Sobic004G172700 Sobic001G090000 Sobic001G090000 Sobic010G144400--Sobic001G090000 Sobic010G144400--Sobic009G016201 Sobic002G258100 Sobic002G258100 Sobic010G144400--Sobic002G258100 Sobic010G144400--Sobic001G471900 Sobic001G253600 Sobic001G253600 Sobic010G144400--Sobic001G253600 Sobic003G249800--Sobic008G161000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic002G282400--Sobic003G249800 Sobic002G282400--Sobic010G243200 Sobic002G282400--Sobic009G143400 Sobic006G141500 Sobic006G141500 Sobic002G282400--Sobic006G141500 Sobic002G282400--Sobic003G181500 Sobic002G282400--Sobic001G037000 Sobic001G071100 Sobic001G071100 Sobic002G282400--Sobic001G071100 Sobic002G282400--Sobic002G211900 Sobic002G393000 Sobic002G393000 Sobic002G282400--Sobic002G393000 Sobic001G389400--Sobic003G249800 Sobic001G389400--Sobic002G068300 Sobic007G190800 Sobic007G190800 Sobic001G389400--Sobic007G190800 Sobic002G022400 Sobic002G022400 Sobic001G389400--Sobic002G022400 Sobic010G257100 Sobic010G257100 Sobic001G389400--Sobic010G257100 Sobic004G152700 Sobic004G152700 Sobic001G389400--Sobic004G152700 Sobic003G321700 Sobic003G321700 Sobic001G389400--Sobic003G321700 Sobic003G429000 Sobic003G429000 Sobic001G389400--Sobic003G429000 Sobic010G230700 Sobic010G230700 Sobic001G389400--Sobic010G230700 Sobic002G205300--Sobic001G037000 Sobic005G103900 Sobic005G103900 Sobic002G205300--Sobic005G103900 Sobic002G205300--Sobic002G282400 Sobic001G422900 Sobic001G422900 Sobic002G205300--Sobic001G422900 Sobic005G229700 Sobic005G229700 Sobic002G205300--Sobic005G229700 Sobic007G107000 Sobic007G107000 Sobic002G205300--Sobic007G107000 Sobic002G205300--Sobic009G016201 Sobic002G205300--Sobic003G249800 Sobic009G070400 Sobic009G070400 Sobic002G205300--Sobic009G070400
Octagon: transcription factors


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