Gene annotation
Transcriptome id Sobic.006G256500.2,Sobic.006G256500.1
Synonym Sb06g032000
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5Y9Z9 , A0A1B6PNX0
Pfam PF14608 PF00013 PF00642 PF00013 PF00642
Panther DB PTHR10288 PTHR10288:SF156
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G12130 : KH domain-containing protein / zinc finger (CCCH type) family protein
RAP-DB (Rice) LOC_Os04g57010.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a057310 , Zm00025a009398
Brachypodium KQJ85169
Barley -
Wheat TraesCS2A02G488000 , TraesCS2D02G488300 , TraesCS2B02G515600
Populus -


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cDNA sequences
Sobic.006G256500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
2 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
3 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
4 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
5 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
6 Sobic.010G039800 expressed protein -
7 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
8 Sobic.001G162000 prefoldin subunit, putative, expressed K09550: prefoldin subunit 4
9 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
10 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
11 Sobic.010G237000 coiled-coil domain-containing protein 72, putative, expressed -
12 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
13 Sobic.010G228600 LSM domain containing protein, expressed -
14 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
15 Sobic.010G275200 HMG1/2, putative, expressed K10802: high mobility group protein B1
16 Sobic.001G335400 protein of unknown function DUF1675 domain containing protein, expressed -
17 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
18 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
19 Sobic.001G037000 PHD finger protein, putative, expressed -
20 Sobic.002G282400 expressed protein -


Gene co-expression network
sample Sobic006G256500 Sobic006G256500 Sobic009G036900 Sobic009G036900 Sobic006G256500--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic006G256500--Sobic002G068300 Sobic004G248800 Sobic004G248800 Sobic006G256500--Sobic004G248800 Sobic007G163700 Sobic007G163700 Sobic006G256500--Sobic007G163700 Sobic001G529000 Sobic001G529000 Sobic006G256500--Sobic001G529000 Sobic010G039800 Sobic010G039800 Sobic006G256500--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic006G256500--Sobic009G016201 Sobic001G162000 Sobic001G162000 Sobic006G256500--Sobic001G162000 Sobic010G243200 Sobic010G243200 Sobic006G256500--Sobic010G243200 Sobic009G036900--Sobic002G068300 Sobic009G034400 Sobic009G034400 Sobic009G036900--Sobic009G034400 Sobic009G036900--Sobic006G256500 Sobic003G024800 Sobic003G024800 Sobic009G036900--Sobic003G024800 Sobic010G228600 Sobic010G228600 Sobic009G036900--Sobic010G228600 Sobic009G036900--Sobic010G039800 Sobic009G036900--Sobic001G529000 Sobic010G071200 Sobic010G071200 Sobic009G036900--Sobic010G071200 Sobic001G424500 Sobic001G424500 Sobic009G036900--Sobic001G424500 Sobic002G068300--Sobic009G036900 Sobic002G068300--Sobic010G228600 Sobic002G068300--Sobic009G016201 Sobic002G068300--Sobic006G256500 Sobic010G144400 Sobic010G144400 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic006G141500 Sobic006G141500 Sobic004G248800--Sobic006G141500 Sobic004G248800--Sobic001G529000 Sobic004G248800--Sobic010G039800 Sobic003G253000 Sobic003G253000 Sobic004G248800--Sobic003G253000 Sobic004G293700 Sobic004G293700 Sobic004G248800--Sobic004G293700 Sobic008G161800 Sobic008G161800 Sobic004G248800--Sobic008G161800 Sobic002G263800 Sobic002G263800 Sobic004G248800--Sobic002G263800 Sobic002G218000 Sobic002G218000 Sobic004G248800--Sobic002G218000 Sobic004G248800--Sobic003G249800 Sobic006G231700 Sobic006G231700 Sobic007G163700--Sobic006G231700 Sobic001G517600 Sobic001G517600 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic007G163700--Sobic001G529000 Sobic001G128400 Sobic001G128400 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic002G373800 Sobic002G373800 Sobic007G163700--Sobic002G373800 Sobic003G018600 Sobic003G018600 Sobic007G163700--Sobic003G018600 Sobic001G529000--Sobic003G362400 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic001G529000--Sobic005G157200 Sobic001G529000--Sobic007G163700 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic010G039800--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic010G039800--Sobic007G095400 Sobic010G039800--Sobic004G248800 Sobic010G039800--Sobic001G529000 Sobic010G039800--Sobic008G161800 Sobic010G039800--Sobic009G016201 Sobic010G039800--Sobic002G218000 Sobic010G039800--Sobic002G373800 Sobic010G039800--Sobic009G036900 Sobic009G016201--Sobic002G263800 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic009G016201--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic010G029400 Sobic010G029400 Sobic009G016201--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic001G162000--Sobic004G107600 Sobic001G162000--Sobic006G256500 Sobic002G022400 Sobic002G022400 Sobic001G162000--Sobic002G022400 Sobic001G162000--Sobic002G068300 Sobic006G220700 Sobic006G220700 Sobic001G162000--Sobic006G220700 Sobic001G162000--Sobic001G331900 Sobic003G115800 Sobic003G115800 Sobic001G162000--Sobic003G115800 Sobic001G162000--Sobic003G249800 Sobic001G162000--Sobic008G161000 Sobic010G243200--Sobic006G141500 Sobic010G243200--Sobic002G282400 Sobic010G243200--Sobic002G218000 Sobic003G350300 Sobic003G350300 Sobic010G243200--Sobic003G350300 Sobic003G321700 Sobic003G321700 Sobic010G243200--Sobic003G321700 Sobic001G177800 Sobic001G177800 Sobic010G243200--Sobic001G177800 Sobic003G181500 Sobic003G181500 Sobic010G243200--Sobic003G181500 Sobic001G288800 Sobic001G288800 Sobic010G243200--Sobic001G288800 Sobic002G187500 Sobic002G187500 Sobic010G243200--Sobic002G187500
Octagon: transcription factors


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