Gene annotation
Transcriptome id Sobic.010G275200.1
Synonym NFD03, NFD3, HMGB3
Functional annotation HMG1/2, putative, expressed
UniProt A0A194YLV3
Pfam PF00505
Panther DB PTHR13711 PTHR13711:SF187
NCBI CDD KOG0381; HMG box-containing protein
KEGG Orthology K10802; high mobility group protein B1
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003682chromatin binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G20696 : high mobility group B3
RAP-DB (Rice) LOC_Os06g51220.3 : HMG1/2, putative, expressed
MaizeGDB (Corn) Zm00025a018547
Brachypodium KQK16649
Barley HORVU7Hr1G121390.3 , HORVU7Hr1G121390.2 , HORVU7Hr1G121390.1 , HORVU7Hr1G121390.7 , HORVU7Hr1G121390.6 , HORVU7Hr1G121390.5 , HORVU7Hr1G121390.4
Wheat TraesCSU02G099700 , TraesCSU02G099700 , TraesCSU02G099700 , TraesCS7A02G552400 , TraesCS7A02G552400 , TraesCS7D02G538400 , TraesCS7D02G538400
Populus -


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cDNA sequences
Sobic.010G275200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G256500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.007G095400 expressed protein -
3 Sobic.010G039800 expressed protein -
4 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
5 Sobic.010G095600 RING-H2 finger protein, putative, expressed -
6 Sobic.002G282400 expressed protein -
7 Sobic.003G344600 BAG domain containing protein, expressed -
8 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
9 Sobic.003G055500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
10 Sobic.004G333500 proteasome maturation factor UMP1 family protein, expressed K11599: POMP, proteasome maturation protein
11 Sobic.002G254200 expressed protein -
12 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
13 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
14 Sobic.010G267900 expressed protein -
15 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
16 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
17 Sobic.001G084900 expressed protein -
18 Sobic.001G162000 prefoldin subunit, putative, expressed K09550: prefoldin subunit 4
19 Sobic.004G172700 plant neutral invertase domain containing protein, expressed -
20 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7


Gene co-expression network
sample Sobic010G275200 Sobic010G275200 Sobic006G256500 Sobic006G256500 Sobic010G275200--Sobic006G256500 Sobic007G095400 Sobic007G095400 Sobic010G275200--Sobic007G095400 Sobic010G039800 Sobic010G039800 Sobic010G275200--Sobic010G039800 Sobic007G163700 Sobic007G163700 Sobic010G275200--Sobic007G163700 Sobic010G095600 Sobic010G095600 Sobic010G275200--Sobic010G095600 Sobic002G282400 Sobic002G282400 Sobic010G275200--Sobic002G282400 Sobic003G344600 Sobic003G344600 Sobic010G275200--Sobic003G344600 Sobic001G415500 Sobic001G415500 Sobic010G275200--Sobic001G415500 Sobic003G055500 Sobic003G055500 Sobic010G275200--Sobic003G055500 Sobic009G036900 Sobic009G036900 Sobic006G256500--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic006G256500--Sobic002G068300 Sobic004G248800 Sobic004G248800 Sobic006G256500--Sobic004G248800 Sobic006G256500--Sobic007G163700 Sobic001G529000 Sobic001G529000 Sobic006G256500--Sobic001G529000 Sobic006G256500--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic006G256500--Sobic009G016201 Sobic001G162000 Sobic001G162000 Sobic006G256500--Sobic001G162000 Sobic010G243200 Sobic010G243200 Sobic006G256500--Sobic010G243200 Sobic002G263800 Sobic002G263800 Sobic007G095400--Sobic002G263800 Sobic007G095400--Sobic009G016201 Sobic008G161800 Sobic008G161800 Sobic007G095400--Sobic008G161800 Sobic007G095400--Sobic010G039800 Sobic009G180000 Sobic009G180000 Sobic007G095400--Sobic009G180000 Sobic004G196300 Sobic004G196300 Sobic007G095400--Sobic004G196300 Sobic001G483100 Sobic001G483100 Sobic007G095400--Sobic001G483100 Sobic010G173100 Sobic010G173100 Sobic007G095400--Sobic010G173100 Sobic010G042800 Sobic010G042800 Sobic007G095400--Sobic010G042800 Sobic010G039800--Sobic002G263800 Sobic010G039800--Sobic007G095400 Sobic010G039800--Sobic004G248800 Sobic010G039800--Sobic001G529000 Sobic010G039800--Sobic008G161800 Sobic010G039800--Sobic009G016201 Sobic002G218000 Sobic002G218000 Sobic010G039800--Sobic002G218000 Sobic002G373800 Sobic002G373800 Sobic010G039800--Sobic002G373800 Sobic010G039800--Sobic009G036900 Sobic006G231700 Sobic006G231700 Sobic007G163700--Sobic006G231700 Sobic001G517600 Sobic001G517600 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic007G163700--Sobic001G529000 Sobic001G128400 Sobic001G128400 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic007G163700--Sobic002G373800 Sobic003G018600 Sobic003G018600 Sobic007G163700--Sobic003G018600 Sobic003G357300 Sobic003G357300 Sobic010G095600--Sobic003G357300 Sobic010G095600--Sobic001G162000 Sobic004G271400 Sobic004G271400 Sobic010G095600--Sobic004G271400 Sobic001G389400 Sobic001G389400 Sobic010G095600--Sobic001G389400 Sobic010G095600--Sobic003G344600 Sobic007G018300 Sobic007G018300 Sobic010G095600--Sobic007G018300 Sobic003G322400 Sobic003G322400 Sobic010G095600--Sobic003G322400 Sobic010G257100 Sobic010G257100 Sobic010G095600--Sobic010G257100 Sobic009G050300 Sobic009G050300 Sobic010G095600--Sobic009G050300 Sobic003G249800 Sobic003G249800 Sobic002G282400--Sobic003G249800 Sobic002G282400--Sobic010G243200 Sobic009G143400 Sobic009G143400 Sobic002G282400--Sobic009G143400 Sobic006G141500 Sobic006G141500 Sobic002G282400--Sobic006G141500 Sobic003G181500 Sobic003G181500 Sobic002G282400--Sobic003G181500 Sobic001G037000 Sobic001G037000 Sobic002G282400--Sobic001G037000 Sobic001G071100 Sobic001G071100 Sobic002G282400--Sobic001G071100 Sobic002G211900 Sobic002G211900 Sobic002G282400--Sobic002G211900 Sobic002G393000 Sobic002G393000 Sobic002G282400--Sobic002G393000 Sobic003G344600--Sobic003G249800 Sobic001G009500 Sobic001G009500 Sobic003G344600--Sobic001G009500 Sobic003G429000 Sobic003G429000 Sobic003G344600--Sobic003G429000 Sobic003G344600--Sobic009G180000 Sobic001G054900 Sobic001G054900 Sobic003G344600--Sobic001G054900 Sobic003G344600--Sobic002G282400 Sobic002G335300 Sobic002G335300 Sobic003G344600--Sobic002G335300 Sobic002G330000 Sobic002G330000 Sobic003G344600--Sobic002G330000 Sobic010G237000 Sobic010G237000 Sobic003G344600--Sobic010G237000 Sobic001G007200 Sobic001G007200 Sobic001G415500--Sobic001G007200 Sobic001G415500--Sobic008G161800 Sobic003G253000 Sobic003G253000 Sobic001G415500--Sobic003G253000 Sobic009G146100 Sobic009G146100 Sobic001G415500--Sobic009G146100 Sobic006G108400 Sobic006G108400 Sobic001G415500--Sobic006G108400 Sobic001G415500--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic003G055500--Sobic001G529000 Sobic003G055500--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic003G055500--Sobic008G058300 Sobic005G111100 Sobic005G111100 Sobic003G055500--Sobic005G111100 Sobic003G055500--Sobic010G267900 Sobic002G406200 Sobic002G406200 Sobic003G055500--Sobic002G406200 Sobic006G150600 Sobic006G150600 Sobic003G055500--Sobic006G150600 Sobic010G065400 Sobic010G065400 Sobic003G055500--Sobic010G065400 Sobic002G406500 Sobic002G406500 Sobic003G055500--Sobic002G406500
Octagon: transcription factors


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