Gene annotation
Transcriptome id Sobic.010G095600.2
Synonym Sb10g008340
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A1W0VS61
Pfam PF13639
Panther DB PTHR14155:SF123 PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G40250 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g12680.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a049443 , Zm00025a042618
Brachypodium KQK18828 , KQK18829 , KQJ90087 , PNT69325 , KQK19432 , KQJ98490 , PNT76148 , PNT76149 , PNT76146 , PNT76147 , PNT68208 , PNT68209 , PNT68206 , PNT68207 , PNT76151 , PNT76150 , KQK19213
Barley HORVU7Hr1G038820.1 , HORVU7Hr1G038820.2 , HORVU7Hr1G038820.3 , HORVU7Hr1G027080.2 , HORVU7Hr1G027080.3 , HORVU7Hr1G027080.1 , HORVU7Hr1G027080.4
Wheat -
Populus -


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cDNA sequences
Sobic.010G095600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G357300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.001G162000 prefoldin subunit, putative, expressed K09550: prefoldin subunit 4
3 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
4 Sobic.001G389400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
5 Sobic.003G344600 BAG domain containing protein, expressed -
6 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
7 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
8 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.009G242300 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
11 Sobic.001G313200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
12 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
13 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
14 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
15 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
16 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
17 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
18 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
19 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
20 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e


Gene co-expression network
sample Sobic010G095600 Sobic010G095600 Sobic003G357300 Sobic003G357300 Sobic010G095600--Sobic003G357300 Sobic001G162000 Sobic001G162000 Sobic010G095600--Sobic001G162000 Sobic004G271400 Sobic004G271400 Sobic010G095600--Sobic004G271400 Sobic001G389400 Sobic001G389400 Sobic010G095600--Sobic001G389400 Sobic003G344600 Sobic003G344600 Sobic010G095600--Sobic003G344600 Sobic007G018300 Sobic007G018300 Sobic010G095600--Sobic007G018300 Sobic003G322400 Sobic003G322400 Sobic010G095600--Sobic003G322400 Sobic010G257100 Sobic010G257100 Sobic010G095600--Sobic010G257100 Sobic009G050300 Sobic009G050300 Sobic010G095600--Sobic009G050300 Sobic004G301000 Sobic004G301000 Sobic003G357300--Sobic004G301000 Sobic004G100700 Sobic004G100700 Sobic003G357300--Sobic004G100700 Sobic003G393900 Sobic003G393900 Sobic003G357300--Sobic003G393900 Sobic001G108200 Sobic001G108200 Sobic003G357300--Sobic001G108200 Sobic004G306300 Sobic004G306300 Sobic003G357300--Sobic004G306300 Sobic006G275200 Sobic006G275200 Sobic003G357300--Sobic006G275200 Sobic009G070400 Sobic009G070400 Sobic003G357300--Sobic009G070400 Sobic002G393000 Sobic002G393000 Sobic003G357300--Sobic002G393000 Sobic001G308300 Sobic001G308300 Sobic003G357300--Sobic001G308300 Sobic004G107600 Sobic004G107600 Sobic001G162000--Sobic004G107600 Sobic006G256500 Sobic006G256500 Sobic001G162000--Sobic006G256500 Sobic002G022400 Sobic002G022400 Sobic001G162000--Sobic002G022400 Sobic002G068300 Sobic002G068300 Sobic001G162000--Sobic002G068300 Sobic006G220700 Sobic006G220700 Sobic001G162000--Sobic006G220700 Sobic001G331900 Sobic001G331900 Sobic001G162000--Sobic001G331900 Sobic003G115800 Sobic003G115800 Sobic001G162000--Sobic003G115800 Sobic003G249800 Sobic003G249800 Sobic001G162000--Sobic003G249800 Sobic008G161000 Sobic008G161000 Sobic001G162000--Sobic008G161000 Sobic003G152600 Sobic003G152600 Sobic004G271400--Sobic003G152600 Sobic002G414700 Sobic002G414700 Sobic004G271400--Sobic002G414700 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G331400 Sobic004G331400 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic001G389400--Sobic003G249800 Sobic001G389400--Sobic002G068300 Sobic007G190800 Sobic007G190800 Sobic001G389400--Sobic007G190800 Sobic001G389400--Sobic002G022400 Sobic001G389400--Sobic010G257100 Sobic004G152700 Sobic004G152700 Sobic001G389400--Sobic004G152700 Sobic003G321700 Sobic003G321700 Sobic001G389400--Sobic003G321700 Sobic003G429000 Sobic003G429000 Sobic001G389400--Sobic003G429000 Sobic010G230700 Sobic010G230700 Sobic001G389400--Sobic010G230700 Sobic003G344600--Sobic003G249800 Sobic001G009500 Sobic001G009500 Sobic003G344600--Sobic001G009500 Sobic003G344600--Sobic003G429000 Sobic009G180000 Sobic009G180000 Sobic003G344600--Sobic009G180000 Sobic003G344600--Sobic001G054900 Sobic002G282400 Sobic002G282400 Sobic003G344600--Sobic002G282400 Sobic002G335300 Sobic002G335300 Sobic003G344600--Sobic002G335300 Sobic002G330000 Sobic002G330000 Sobic003G344600--Sobic002G330000 Sobic010G237000 Sobic010G237000 Sobic003G344600--Sobic010G237000 Sobic007G018300--Sobic010G230700 Sobic007G018300--Sobic005G019700 Sobic009G215200 Sobic009G215200 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G019000 Sobic007G019000 Sobic007G018300--Sobic007G019000 Sobic007G197800 Sobic007G197800 Sobic007G018300--Sobic007G197800 Sobic007G018300--Sobic001G054900 Sobic003G322400--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic003G322400--Sobic006G116700 Sobic003G322400--Sobic001G054900 Sobic003G408100 Sobic003G408100 Sobic003G322400--Sobic003G408100 Sobic001G374700 Sobic001G374700 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic001G019900 Sobic001G019900 Sobic010G257100--Sobic001G019900 Sobic001G084900 Sobic001G084900 Sobic010G257100--Sobic001G084900 Sobic010G257100--Sobic003G321700 Sobic010G257100--Sobic003G249800 Sobic005G092800 Sobic005G092800 Sobic010G257100--Sobic005G092800 Sobic010G243200 Sobic010G243200 Sobic010G257100--Sobic010G243200 Sobic004G026400 Sobic004G026400 Sobic010G257100--Sobic004G026400 Sobic010G153100 Sobic010G153100 Sobic010G257100--Sobic010G153100 Sobic003G072300 Sobic003G072300 Sobic010G257100--Sobic003G072300 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500
Octagon: transcription factors


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