Gene annotation
Transcriptome id Sobic.001G313200.1
Synonym Sb01g030460
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt -
Pfam PF15511
Panther DB PTHR10484
NCBI CDD KOG3467; Histone H4
KEGG Orthology K11254; histone H4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53730 : Histone superfamily protein
RAP-DB (Rice) LOC_Os05g38740.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026958 , Zm00025a000277 , Zm00025a048010 , Zm00025a023329 , Zm00025a010066 , Zm00025a013952 , Zm00025a056690 , Zm00025a010063 , Zm00025a047950 , Zm00025a037747 , Zm00025a032342 , Zm00025a047110 , Zm00025a035684 , Zm00025a039706
Brachypodium KQJ86516 , KQK12788 , KQK05829 , KQJ90348 , PNT61710 , KQK05861 , KQJ84202 , PNT69244 , PNT73988
Barley HORVU6Hr1G066400.1 , HORVU6Hr1G066400.2 , HORVU6Hr1G066400.3 , HORVU7Hr1G100410.1 , HORVU6Hr1G011020.4 , HORVU6Hr1G011020.5 , HORVU1Hr1G071760.1 , HORVU6Hr1G011020.1 , HORVU6Hr1G011020.2 , HORVU6Hr1G011020.3 , HORVU2Hr1G098340.4 , HORVU2Hr1G098340.2 , HORVU2Hr1G098340.3 , HORVU2Hr1G098340.1 , HORVU1Hr1G090300.5 , HORVU1Hr1G090300.4 , HORVU1Hr1G090300.7 , HORVU1Hr1G090300.6 , HORVU1Hr1G090300.1 , HORVU1Hr1G090300.3 , HORVU1Hr1G090300.2 , HORVU1Hr1G090300.9 , HORVU1Hr1G090300.8 , HORVU2Hr1G040050.1 , HORVU1Hr1G090300.46 , HORVU1Hr1G090300.47 , HORVU1Hr1G080200.3 , HORVU1Hr1G090300.45 , HORVU1Hr1G029090.1 , HORVU1Hr1G029090.2 , HORVU5Hr1G086620.1 , HORVU2Hr1G099490.1 , HORVU5Hr1G086620.3 , HORVU5Hr1G086620.2 , HORVU5Hr1G086620.5 , HORVU5Hr1G086620.4 , HORVU5Hr1G086620.6 , HORVU2Hr1G098320.1 , HORVU1Hr1G071760.2 , HORVU2Hr1G099490.2 , HORVU1Hr1G071760.3 , HORVU3Hr1G088160.2 , HORVU3Hr1G088160.1 , HORVU1Hr1G071190.2 , HORVU1Hr1G079440.2 , HORVU1Hr1G079440.1 , HORVU2Hr1G099490.3 , HORVU1Hr1G071190.1 , HORVU1Hr1G071190.3 , HORVU1Hr1G066960.1 , HORVU1Hr1G052030.1 , HORVU1Hr1G071780.44 , HORVU1Hr1G090300.11 , HORVU1Hr1G090300.10 , HORVU1Hr1G020060.1 , HORVU1Hr1G090300.12 , HORVU6Hr1G029210.1 , HORVU6Hr1G029210.2 , HORVU6Hr1G029210.3 , HORVU4Hr1G063260.1 , HORVU2Hr1G106590.1 , HORVU4Hr1G063260.2 , HORVU1Hr1G090300.42 , HORVU1Hr1G090300.43 , HORVU1Hr1G090300.40 , HORVU1Hr1G090300.41 , HORVU1Hr1G080200.1 , HORVU6Hr1G011510.1 , HORVU6Hr1G011510.2 , HORVU1Hr1G080200.2 , HORVU1Hr1G090300.19 , HORVU1Hr1G090300.18 , HORVU1Hr1G090300.24 , HORVU1Hr1G090300.25 , HORVU2Hr1G097990.2 , HORVU1Hr1G090300.44 , HORVU2Hr1G097990.1 , HORVU1Hr1G090300.26 , HORVU1Hr1G090300.39 , HORVU1Hr1G090300.38 , HORVU1Hr1G090300.37 , HORVU1Hr1G090300.36 , HORVU1Hr1G090300.35 , HORVU1Hr1G090300.34 , HORVU1Hr1G090300.33 , HORVU1Hr1G090300.32 , HORVU1Hr1G090300.31 , HORVU1Hr1G090300.30 , HORVU1Hr1G070700.3 , HORVU1Hr1G052030.2 , HORVU1Hr1G071210.2 , HORVU1Hr1G071210.3 , HORVU1Hr1G071210.1 , HORVU1Hr1G070700.2 , HORVU1Hr1G071210.4 , HORVU1Hr1G071210.5 , HORVU1Hr1G017830.1 , HORVU3Hr1G023460.1 , HORVU3Hr1G023460.2 , HORVU1Hr1G070700.1 , HORVU1Hr1G090300.28 , HORVU1Hr1G090300.29 , HORVU5Hr1G087870.3 , HORVU5Hr1G087870.2 , HORVU5Hr1G087870.1 , HORVU1Hr1G090300.27 , HORVU1Hr1G090300.20 , HORVU1Hr1G090300.21 , HORVU1Hr1G090300.22 , HORVU1Hr1G090300.23 , HORVU7Hr1G043300.1 , HORVU1Hr1G073680.1 , HORVU6Hr1G011710.1 , HORVU5Hr1G087830.1 , HORVU2Hr1G093680.4 , HORVU2Hr1G093680.2 , HORVU2Hr1G093680.3 , HORVU2Hr1G093680.1 , HORVU4Hr1G023200.3 , HORVU3Hr1G087170.1 , HORVU4Hr1G023200.2 , HORVU6Hr1G011780.1 , HORVU6Hr1G013530.1 , HORVU1Hr1G090300.13 , HORVU6Hr1G011780.2 , HORVU1Hr1G090300.15 , HORVU1Hr1G090300.14 , HORVU1Hr1G090300.17 , HORVU1Hr1G090300.16 , HORVU5Hr1G086630.2 , HORVU5Hr1G086630.3 , HORVU5Hr1G086630.1 , HORVU5Hr1G086630.6 , HORVU5Hr1G086630.7 , HORVU5Hr1G086630.4 , HORVU5Hr1G086630.5 , HORVU6Hr1G011540.2 , HORVU6Hr1G011540.1 , HORVU1Hr1G022390.2 , HORVU1Hr1G022390.1 , HORVU5Hr1G079130.2 , HORVU5Hr1G079130.1 , HORVU7Hr1G114720.1 , HORVU4Hr1G023200.1 , HORVU1Hr1G020040.1 , HORVU1Hr1G020040.2
Wheat TraesCS2D02G415000 , TraesCS7A02G408100 , TraesCS6B02G072500 , TraesCS2A02G203000
Populus -


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cDNA sequences
Sobic.001G313200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G529400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
2 Sobic.010G047100 histone H3, putative, expressed K11253: histone H3
3 Sobic.004G203700 ubiquitin family protein, putative, expressed -
4 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -
5 Sobic.009G145500 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.003G125650 - K02183: calmodulin
7 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
8 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
9 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
10 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
11 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
12 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
13 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
14 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
15 Sobic.001G018300 cytochrome P450 71E1, putative, expressed -
16 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
17 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
18 Sobic.010G221300 expressed protein -
19 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
20 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -


Gene co-expression network
sample Sobic001G313200 Sobic001G313200 Sobic001G529400 Sobic001G529400 Sobic001G313200--Sobic001G529400 Sobic010G047100 Sobic010G047100 Sobic001G313200--Sobic010G047100 Sobic004G203700 Sobic004G203700 Sobic001G313200--Sobic004G203700 Sobic004G041900 Sobic004G041900 Sobic001G313200--Sobic004G041900 Sobic009G145500 Sobic009G145500 Sobic001G313200--Sobic009G145500 Sobic003G125650 Sobic003G125650 Sobic001G313200--Sobic003G125650 Sobic003G078200 Sobic003G078200 Sobic001G313200--Sobic003G078200 Sobic004G271400 Sobic004G271400 Sobic001G313200--Sobic004G271400 Sobic006G191800 Sobic006G191800 Sobic001G313200--Sobic006G191800 Sobic001G529400--Sobic001G313200 Sobic001G529400--Sobic010G047100 Sobic001G529400--Sobic006G191800 Sobic009G015900 Sobic009G015900 Sobic001G529400--Sobic009G015900 Sobic003G347900 Sobic003G347900 Sobic001G529400--Sobic003G347900 Sobic010G221300 Sobic010G221300 Sobic001G529400--Sobic010G221300 Sobic001G529400--Sobic003G078200 Sobic006G137800 Sobic006G137800 Sobic001G529400--Sobic006G137800 Sobic003G057100 Sobic003G057100 Sobic001G529400--Sobic003G057100 Sobic010G047100--Sobic001G313200 Sobic010G047100--Sobic001G529400 Sobic010G047100--Sobic004G041900 Sobic010G047100--Sobic006G191800 Sobic010G047100--Sobic010G221300 Sobic001G031700 Sobic001G031700 Sobic010G047100--Sobic001G031700 Sobic003G160700 Sobic003G160700 Sobic010G047100--Sobic003G160700 Sobic003G322532 Sobic003G322532 Sobic010G047100--Sobic003G322532 Sobic010G047100--Sobic003G125650 Sobic003G303100 Sobic003G303100 Sobic004G203700--Sobic003G303100 Sobic002G055700 Sobic002G055700 Sobic004G203700--Sobic002G055700 Sobic002G338500 Sobic002G338500 Sobic004G203700--Sobic002G338500 Sobic001G318500 Sobic001G318500 Sobic004G203700--Sobic001G318500 Sobic003G426400 Sobic003G426400 Sobic004G203700--Sobic003G426400 Sobic003G043600 Sobic003G043600 Sobic004G203700--Sobic003G043600 Sobic003G382600 Sobic003G382600 Sobic004G203700--Sobic003G382600 Sobic002G200600 Sobic002G200600 Sobic004G203700--Sobic002G200600 Sobic001G367600 Sobic001G367600 Sobic004G203700--Sobic001G367600 Sobic006G075400 Sobic006G075400 Sobic004G041900--Sobic006G075400 Sobic007G017500 Sobic007G017500 Sobic004G041900--Sobic007G017500 Sobic004G041900--Sobic003G043600 Sobic001G330400 Sobic001G330400 Sobic004G041900--Sobic001G330400 Sobic009G184000 Sobic009G184000 Sobic004G041900--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic004G041900--Sobic001G318700 Sobic003G228900 Sobic003G228900 Sobic004G041900--Sobic003G228900 Sobic004G041900--Sobic001G031700 Sobic003G268600 Sobic003G268600 Sobic004G041900--Sobic003G268600 Sobic009G145500--Sobic003G043600 Sobic003G073380 Sobic003G073380 Sobic009G145500--Sobic003G073380 Sobic004G148200 Sobic004G148200 Sobic009G145500--Sobic004G148200 Sobic001G231400 Sobic001G231400 Sobic009G145500--Sobic001G231400 Sobic009G145500--Sobic003G268600 Sobic009G145500--Sobic002G338500 Sobic006G235000 Sobic006G235000 Sobic009G145500--Sobic006G235000 Sobic009G145600 Sobic009G145600 Sobic009G145500--Sobic009G145600 Sobic006G268800 Sobic006G268800 Sobic009G145500--Sobic006G268800 Sobic007G197800 Sobic007G197800 Sobic003G125650--Sobic007G197800 Sobic001G130301 Sobic001G130301 Sobic003G125650--Sobic001G130301 Sobic001G018900 Sobic001G018900 Sobic003G125650--Sobic001G018900 Sobic001G402050 Sobic001G402050 Sobic003G125650--Sobic001G402050 Sobic001G390300 Sobic001G390300 Sobic003G125650--Sobic001G390300 Sobic006G116700 Sobic006G116700 Sobic003G125650--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic003G125650--Sobic001G493001 Sobic003G125650--Sobic002G200600 Sobic009G050300 Sobic009G050300 Sobic003G125650--Sobic009G050300 Sobic002G372400 Sobic002G372400 Sobic003G078200--Sobic002G372400 Sobic009G054800 Sobic009G054800 Sobic003G078200--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic003G078200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic003G078200--Sobic005G019700 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic003G078200--Sobic001G018900 Sobic003G078200--Sobic006G116700 Sobic003G152600 Sobic003G152600 Sobic004G271400--Sobic003G152600 Sobic002G414700 Sobic002G414700 Sobic004G271400--Sobic002G414700 Sobic003G322400 Sobic003G322400 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G331400 Sobic004G331400 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic006G191800--Sobic010G221300 Sobic006G191800--Sobic001G529400 Sobic006G191800--Sobic010G047100 Sobic001G361600 Sobic001G361600 Sobic006G191800--Sobic001G361600 Sobic006G191800--Sobic003G125650 Sobic006G191800--Sobic001G313200 Sobic002G389400 Sobic002G389400 Sobic006G191800--Sobic002G389400 Sobic001G295200 Sobic001G295200 Sobic006G191800--Sobic001G295200 Sobic006G191800--Sobic003G160700
Octagon: transcription factors


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