Gene annotation
Transcriptome id Sobic.010G047100.1
Synonym Sb10g004100
Functional annotation histone H3, putative, expressed
UniProt -
Pfam PF00125
Panther DB PTHR11426
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G09200 : Histone superfamily protein
RAP-DB (Rice) LOC_Os04g34240.1 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a056027 , Zm00025a011450 , Zm00025a039567 , Zm00025a056046 , Zm00025a023384 , Zm00025a011166 , Zm00025a026719 , Zm00025a031558 , Zm00025a041588 , Zm00025a011448 , Zm00025a049961 , Zm00025a025526 , Zm00025a050169 , Zm00025a041383 , Zm00025a020589
Brachypodium PNT61061 , PNT73249 , KQK06043 , KQK05154 , KQK06659 , KQJ86807 , KQJ99805 , KQK19721 , PNT76594
Barley HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU1Hr1G058490.1 , HORVU1Hr1G017800.4 , HORVU1Hr1G017800.3 , HORVU1Hr1G017800.2 , HORVU1Hr1G017800.1 , HORVU1Hr1G058490.3 , HORVU6Hr1G029190.6 , HORVU6Hr1G029190.5 , HORVU6Hr1G029190.4 , HORVU6Hr1G029190.3 , HORVU6Hr1G029190.2 , HORVU6Hr1G029190.1 , HORVU1Hr1G058490.4 , HORVU7Hr1G025160.2 , HORVU7Hr1G025160.1 , HORVU7Hr1G032270.3 , HORVU7Hr1G032270.2 , HORVU7Hr1G032270.1 , HORVU7Hr1G100690.2 , HORVU7Hr1G100690.1 , HORVU7Hr1G032270.4 , HORVU7Hr1G012820.1 , HORVU7Hr1G012820.2 , HORVU7Hr1G012820.3 , HORVU7Hr1G012820.4 , HORVU7Hr1G012820.5 , HORVU7Hr1G012820.6 , HORVU2Hr1G090210.1 , HORVU2Hr1G090210.2 , HORVU2Hr1G090210.3 , HORVU7Hr1G021840.16 , HORVU7Hr1G021840.14 , HORVU7Hr1G021840.15 , HORVU7Hr1G021840.12 , HORVU7Hr1G021840.13 , HORVU7Hr1G021840.10 , HORVU7Hr1G021840.11 , HORVU7Hr1G025200.2 , HORVU7Hr1G025200.3 , HORVU7Hr1G025200.1 , HORVU6Hr1G031580.1 , HORVU6Hr1G031580.3 , HORVU6Hr1G031580.2 , HORVU1Hr1G020070.2 , HORVU7Hr1G029190.1 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.1 , HORVU1Hr1G058490.2 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4 , HORVU7Hr1G024990.4 , HORVU7Hr1G024990.1 , HORVU1Hr1G020070.1 , HORVU7Hr1G024990.3 , HORVU7Hr1G024990.2 , HORVU4Hr1G073150.4 , HORVU4Hr1G073150.2 , HORVU4Hr1G073150.1 , HORVU7Hr1G021840.4 , HORVU7Hr1G021840.5 , HORVU7Hr1G021840.6 , HORVU7Hr1G021840.7 , HORVU7Hr1G021840.1 , HORVU7Hr1G021840.2 , HORVU7Hr1G021840.3 , HORVU7Hr1G021840.8 , HORVU7Hr1G021840.9 , HORVU1Hr1G020070.3 , HORVU6Hr1G007470.1 , HORVU6Hr1G007470.2 , HORVU1Hr1G022400.3 , HORVU1Hr1G022400.2 , HORVU1Hr1G022400.1 , HORVU1Hr1G022400.4 , HORVU1Hr1G074340.1 , HORVU7Hr1G079790.1 , HORVU1Hr1G073670.1 , HORVU3Hr1G063270.1 , HORVU7Hr1G034470.1 , HORVU3Hr1G063270.2 , HORVU6Hr1G011520.1 , HORVU6Hr1G007820.3 , HORVU6Hr1G007820.2 , HORVU6Hr1G007820.1 , HORVU6Hr1G013290.1 , HORVU3Hr1G083350.8 , HORVU7Hr1G025330.1 , HORVU7Hr1G025150.1 , HORVU2Hr1G074240.1 , HORVU2Hr1G074240.3 , HORVU2Hr1G074240.2 , HORVU2Hr1G074240.5 , HORVU2Hr1G074240.4 , HORVU6Hr1G007820.4 , HORVU6Hr1G029200.3 , HORVU6Hr1G029200.2 , HORVU6Hr1G029200.1 , HORVU1Hr1G020050.2 , HORVU1Hr1G020050.3 , HORVU1Hr1G020050.1 , HORVU1Hr1G020050.4 , HORVU7Hr1G033030.1 , HORVU4Hr1G067970.1 , HORVU4Hr1G067970.3 , HORVU4Hr1G067970.2 , HORVU7Hr1G100450.1 , HORVU3Hr1G083350.1 , HORVU3Hr1G083350.2 , HORVU3Hr1G083350.3 , HORVU3Hr1G083350.4 , HORVU3Hr1G083350.5 , HORVU3Hr1G083350.6 , HORVU3Hr1G083350.7 , HORVU1Hr1G080190.1 , HORVU1Hr1G080190.3 , HORVU1Hr1G080190.2 , HORVU7Hr1G046350.1 , HORVU7Hr1G021840.23
Wheat TraesCS7A02G067800 , TraesCS7A02G442900 , TraesCS7D02G061900 , TraesCS6A02G038600 , TraesCS6A02G099700 , TraesCS7B02G341600 , TraesCS6D02G044300 , TraesCS4A02G423800 , TraesCSU02G092100 , TraesCS6B02G053500 , TraesCS6B02G053300 , TraesCS2B02G337200 , TraesCS6A02G075600 , TraesCS7D02G061500 , TraesCS4B02G275500 , TraesCS1A02G228800 , TraesCS6B02G053200 , TraesCS3B02G167700 , TraesCS7A02G157100 , TraesCS6A02G038400 , TraesCS7D02G432000 , TraesCS4A02G421900 , TraesCS6A02G038500 , TraesCS4A02G421500
Populus -


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cDNA sequences
Sobic.010G047100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G313200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
2 Sobic.001G529400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
3 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -
4 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
5 Sobic.010G221300 expressed protein -
6 Sobic.001G031700 nucleobase-ascorbate transporter, putative, expressed -
7 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
8 Sobic.003G322532 - K02975: RP-S25e, small subunit ribosomal protein S25e
9 Sobic.003G125650 - K02183: calmodulin
10 Sobic.006G235000 expressed protein -
11 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
12 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
13 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
14 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
16 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
17 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
18 Sobic.001G330400 ZOS3-11 - C2H2 zinc finger protein, expressed -
19 Sobic.006G235100 expressed protein -
20 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G047100 Sobic010G047100 Sobic001G313200 Sobic001G313200 Sobic010G047100--Sobic001G313200 Sobic001G529400 Sobic001G529400 Sobic010G047100--Sobic001G529400 Sobic004G041900 Sobic004G041900 Sobic010G047100--Sobic004G041900 Sobic006G191800 Sobic006G191800 Sobic010G047100--Sobic006G191800 Sobic010G221300 Sobic010G221300 Sobic010G047100--Sobic010G221300 Sobic001G031700 Sobic001G031700 Sobic010G047100--Sobic001G031700 Sobic003G160700 Sobic003G160700 Sobic010G047100--Sobic003G160700 Sobic003G322532 Sobic003G322532 Sobic010G047100--Sobic003G322532 Sobic003G125650 Sobic003G125650 Sobic010G047100--Sobic003G125650 Sobic001G313200--Sobic001G529400 Sobic001G313200--Sobic010G047100 Sobic004G203700 Sobic004G203700 Sobic001G313200--Sobic004G203700 Sobic001G313200--Sobic004G041900 Sobic009G145500 Sobic009G145500 Sobic001G313200--Sobic009G145500 Sobic001G313200--Sobic003G125650 Sobic003G078200 Sobic003G078200 Sobic001G313200--Sobic003G078200 Sobic004G271400 Sobic004G271400 Sobic001G313200--Sobic004G271400 Sobic001G313200--Sobic006G191800 Sobic001G529400--Sobic001G313200 Sobic001G529400--Sobic010G047100 Sobic001G529400--Sobic006G191800 Sobic009G015900 Sobic009G015900 Sobic001G529400--Sobic009G015900 Sobic003G347900 Sobic003G347900 Sobic001G529400--Sobic003G347900 Sobic001G529400--Sobic010G221300 Sobic001G529400--Sobic003G078200 Sobic006G137800 Sobic006G137800 Sobic001G529400--Sobic006G137800 Sobic003G057100 Sobic003G057100 Sobic001G529400--Sobic003G057100 Sobic006G075400 Sobic006G075400 Sobic004G041900--Sobic006G075400 Sobic007G017500 Sobic007G017500 Sobic004G041900--Sobic007G017500 Sobic003G043600 Sobic003G043600 Sobic004G041900--Sobic003G043600 Sobic001G330400 Sobic001G330400 Sobic004G041900--Sobic001G330400 Sobic009G184000 Sobic009G184000 Sobic004G041900--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic004G041900--Sobic001G318700 Sobic003G228900 Sobic003G228900 Sobic004G041900--Sobic003G228900 Sobic004G041900--Sobic001G031700 Sobic003G268600 Sobic003G268600 Sobic004G041900--Sobic003G268600 Sobic006G191800--Sobic010G221300 Sobic006G191800--Sobic001G529400 Sobic006G191800--Sobic010G047100 Sobic001G361600 Sobic001G361600 Sobic006G191800--Sobic001G361600 Sobic006G191800--Sobic003G125650 Sobic006G191800--Sobic001G313200 Sobic002G389400 Sobic002G389400 Sobic006G191800--Sobic002G389400 Sobic001G295200 Sobic001G295200 Sobic006G191800--Sobic001G295200 Sobic006G191800--Sobic003G160700 Sobic010G221300--Sobic006G191800 Sobic010G221300--Sobic004G041900 Sobic010G221300--Sobic001G031700 Sobic010G221300--Sobic010G047100 Sobic010G221300--Sobic003G160700 Sobic010G221300--Sobic003G125650 Sobic010G221300--Sobic004G203700 Sobic010G221300--Sobic009G184000 Sobic002G387900 Sobic002G387900 Sobic010G221300--Sobic002G387900 Sobic001G031700--Sobic004G041900 Sobic001G031700--Sobic007G017500 Sobic001G031700--Sobic006G075400 Sobic001G031700--Sobic001G295200 Sobic007G058400 Sobic007G058400 Sobic001G031700--Sobic007G058400 Sobic003G432700 Sobic003G432700 Sobic001G031700--Sobic003G432700 Sobic001G031700--Sobic010G221300 Sobic004G294400 Sobic004G294400 Sobic001G031700--Sobic004G294400 Sobic001G313600 Sobic001G313600 Sobic001G031700--Sobic001G313600 Sobic005G113300 Sobic005G113300 Sobic003G160700--Sobic005G113300 Sobic003G160700--Sobic004G041900 Sobic003G160700--Sobic003G125650 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic004G220000 Sobic004G220000 Sobic003G160700--Sobic004G220000 Sobic009G188000 Sobic009G188000 Sobic003G160700--Sobic009G188000 Sobic003G436700 Sobic003G436700 Sobic003G160700--Sobic003G436700 Sobic002G414700 Sobic002G414700 Sobic003G322532--Sobic002G414700 Sobic003G322532--Sobic001G295200 Sobic007G211700 Sobic007G211700 Sobic003G322532--Sobic007G211700 Sobic005G107900 Sobic005G107900 Sobic003G322532--Sobic005G107900 Sobic001G367600 Sobic001G367600 Sobic003G322532--Sobic001G367600 Sobic003G152600 Sobic003G152600 Sobic003G322532--Sobic003G152600 Sobic003G322532--Sobic003G043600 Sobic009G111000 Sobic009G111000 Sobic003G322532--Sobic009G111000 Sobic001G493001 Sobic001G493001 Sobic003G322532--Sobic001G493001 Sobic007G197800 Sobic007G197800 Sobic003G125650--Sobic007G197800 Sobic001G130301 Sobic001G130301 Sobic003G125650--Sobic001G130301 Sobic001G018900 Sobic001G018900 Sobic003G125650--Sobic001G018900 Sobic001G402050 Sobic001G402050 Sobic003G125650--Sobic001G402050 Sobic001G390300 Sobic001G390300 Sobic003G125650--Sobic001G390300 Sobic006G116700 Sobic006G116700 Sobic003G125650--Sobic006G116700 Sobic003G125650--Sobic001G493001 Sobic002G200600 Sobic002G200600 Sobic003G125650--Sobic002G200600 Sobic009G050300 Sobic009G050300 Sobic003G125650--Sobic009G050300
Octagon: transcription factors


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