Gene annotation
Transcriptome id Sobic.003G322532.1
Synonym -
Functional annotation -
UniProt A0A1W0W006
Pfam PF03297
Panther DB PTHR12850
NCBI CDD KOG1767; 40S ribosomal protein S25
KEGG Orthology K02975; RP-S25e, small subunit ribosomal protein S25e
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39200 : Ribosomal protein S25 family protein
RAP-DB (Rice) LOC_Os08g44480.1 : 40S ribosomal protein S25, putative, expressed
MaizeGDB (Corn) Zm00025a005600 , Zm00025a001729 , Zm00025a027231 , Zm00025a039866
Brachypodium KQK02321 , KQJ91597 , KQJ99374
Barley HORVU4Hr1G001220.3 , HORVU4Hr1G001220.4 , HORVU4Hr1G001220.6
Wheat TraesCS5A02G101500 , TraesCS4A02G307100 , TraesCS4A02G307100 , TraesCS4B02G008900 , TraesCS7D02G487600 , TraesCS7B02G407300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
2 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
3 Sobic.007G211700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
4 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
5 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
7 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
8 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
10 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
11 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.010G047100 histone H3, putative, expressed K11253: histone H3
13 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
14 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
15 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
16 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
18 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
19 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -
20 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae


Gene co-expression network
sample Sobic003G322532 Sobic003G322532 Sobic002G414700 Sobic002G414700 Sobic003G322532--Sobic002G414700 Sobic001G295200 Sobic001G295200 Sobic003G322532--Sobic001G295200 Sobic007G211700 Sobic007G211700 Sobic003G322532--Sobic007G211700 Sobic005G107900 Sobic005G107900 Sobic003G322532--Sobic005G107900 Sobic001G367600 Sobic001G367600 Sobic003G322532--Sobic001G367600 Sobic003G152600 Sobic003G152600 Sobic003G322532--Sobic003G152600 Sobic003G043600 Sobic003G043600 Sobic003G322532--Sobic003G043600 Sobic009G111000 Sobic009G111000 Sobic003G322532--Sobic009G111000 Sobic001G493001 Sobic001G493001 Sobic003G322532--Sobic001G493001 Sobic004G271400 Sobic004G271400 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic001G175300 Sobic001G175300 Sobic002G414700--Sobic001G175300 Sobic002G414700--Sobic001G493001 Sobic003G078200 Sobic003G078200 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic006G141700 Sobic006G141700 Sobic001G295200--Sobic006G141700 Sobic001G018900 Sobic001G018900 Sobic001G295200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic001G295200--Sobic006G116700 Sobic001G361600 Sobic001G361600 Sobic001G295200--Sobic001G361600 Sobic005G113300 Sobic005G113300 Sobic001G295200--Sobic005G113300 Sobic001G295200--Sobic003G078200 Sobic001G036900 Sobic001G036900 Sobic001G295200--Sobic001G036900 Sobic007G197800 Sobic007G197800 Sobic001G295200--Sobic007G197800 Sobic009G215200 Sobic009G215200 Sobic001G295200--Sobic009G215200 Sobic007G211700--Sobic002G414700 Sobic009G105600 Sobic009G105600 Sobic007G211700--Sobic009G105600 Sobic004G046200 Sobic004G046200 Sobic007G211700--Sobic004G046200 Sobic007G211700--Sobic003G322532 Sobic006G277600 Sobic006G277600 Sobic007G211700--Sobic006G277600 Sobic003G084400 Sobic003G084400 Sobic007G211700--Sobic003G084400 Sobic009G105700 Sobic009G105700 Sobic007G211700--Sobic009G105700 Sobic003G264600 Sobic003G264600 Sobic007G211700--Sobic003G264600 Sobic007G211700--Sobic004G271400 Sobic001G502400 Sobic001G502400 Sobic005G107900--Sobic001G502400 Sobic001G313600 Sobic001G313600 Sobic005G107900--Sobic001G313600 Sobic003G432700 Sobic003G432700 Sobic005G107900--Sobic003G432700 Sobic005G011300 Sobic005G011300 Sobic005G107900--Sobic005G011300 Sobic006G235100 Sobic006G235100 Sobic005G107900--Sobic006G235100 Sobic006G075400 Sobic006G075400 Sobic005G107900--Sobic006G075400 Sobic009G184000 Sobic009G184000 Sobic005G107900--Sobic009G184000 Sobic009G188000 Sobic009G188000 Sobic005G107900--Sobic009G188000 Sobic001G169500 Sobic001G169500 Sobic005G107900--Sobic001G169500 Sobic002G192000 Sobic002G192000 Sobic001G367600--Sobic002G192000 Sobic001G140900 Sobic001G140900 Sobic001G367600--Sobic001G140900 Sobic001G038900 Sobic001G038900 Sobic001G367600--Sobic001G038900 Sobic001G231700 Sobic001G231700 Sobic001G367600--Sobic001G231700 Sobic002G017800 Sobic002G017800 Sobic001G367600--Sobic002G017800 Sobic004G100700 Sobic004G100700 Sobic001G367600--Sobic004G100700 Sobic006G103000 Sobic006G103000 Sobic001G367600--Sobic006G103000 Sobic002G055700 Sobic002G055700 Sobic001G367600--Sobic002G055700 Sobic002G353900 Sobic002G353900 Sobic001G367600--Sobic002G353900 Sobic003G408100 Sobic003G408100 Sobic003G152600--Sobic003G408100 Sobic001G054900 Sobic001G054900 Sobic003G152600--Sobic001G054900 Sobic003G152600--Sobic004G271400 Sobic004G331400 Sobic004G331400 Sobic003G152600--Sobic004G331400 Sobic003G322400 Sobic003G322400 Sobic003G152600--Sobic003G322400 Sobic001G376600 Sobic001G376600 Sobic003G152600--Sobic001G376600 Sobic004G103800 Sobic004G103800 Sobic003G152600--Sobic004G103800 Sobic010G206200 Sobic010G206200 Sobic003G152600--Sobic010G206200 Sobic001G374700 Sobic001G374700 Sobic003G152600--Sobic001G374700 Sobic002G338500 Sobic002G338500 Sobic003G043600--Sobic002G338500 Sobic009G145500 Sobic009G145500 Sobic003G043600--Sobic009G145500 Sobic003G268600 Sobic003G268600 Sobic003G043600--Sobic003G268600 Sobic003G043600--Sobic006G075400 Sobic003G442100 Sobic003G442100 Sobic003G043600--Sobic003G442100 Sobic001G310600 Sobic001G310600 Sobic003G043600--Sobic001G310600 Sobic003G043600--Sobic009G184000 Sobic009G145700 Sobic009G145700 Sobic003G043600--Sobic009G145700 Sobic001G318700 Sobic001G318700 Sobic003G043600--Sobic001G318700 Sobic009G111000--Sobic002G017800 Sobic002G176100 Sobic002G176100 Sobic009G111000--Sobic002G176100 Sobic009G111000--Sobic001G367600 Sobic003G417200 Sobic003G417200 Sobic009G111000--Sobic003G417200 Sobic001G325400 Sobic001G325400 Sobic009G111000--Sobic001G325400 Sobic003G426400 Sobic003G426400 Sobic009G111000--Sobic003G426400 Sobic009G111000--Sobic002G055700 Sobic001G500000 Sobic001G500000 Sobic009G111000--Sobic001G500000 Sobic003G319500 Sobic003G319500 Sobic009G111000--Sobic003G319500 Sobic001G130301 Sobic001G130301 Sobic001G493001--Sobic001G130301 Sobic001G493001--Sobic001G374700 Sobic006G047400 Sobic006G047400 Sobic001G493001--Sobic006G047400 Sobic001G493001--Sobic007G184600 Sobic001G493001--Sobic001G402050 Sobic009G050300 Sobic009G050300 Sobic001G493001--Sobic009G050300 Sobic001G493001--Sobic001G018900 Sobic002G081600 Sobic002G081600 Sobic001G493001--Sobic002G081600 Sobic002G200600 Sobic002G200600 Sobic001G493001--Sobic002G200600
Octagon: transcription factors


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