Gene annotation
Transcriptome id Sobic.004G055100.1,Sobic.004G055100.2
Synonym Sb04g004680
Functional annotation 60S ribosomal protein, putative, expressed
UniProt C5XW37
Pfam PF00828
Panther DB PTHR11721 PTHR11721:SF5
NCBI CDD KOG1742; 60s ribosomal protein L15/L27
KEGG Orthology K02900; RP-L27Ae, large subunit ribosomal protein L27Ae
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G70600 : Ribosomal protein L18e/L15 superfamily protein
RAP-DB (Rice) LOC_Os07g42170.1 : 60S ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a015192 , Zm00025a048738
Brachypodium KQK21319 , KQK15281
Barley -
Wheat -
Populus PNT25476 , PNT32678 , PNS98297


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cDNA sequences
Sobic.004G055100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
2 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
3 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
4 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
5 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
6 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
7 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
8 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
9 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
10 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
11 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
12 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
13 Sobic.001G508900 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
14 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
15 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
16 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
17 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
18 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
19 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
20 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e


Gene co-expression network
sample Sobic004G055100 Sobic004G055100 Sobic010G070500 Sobic010G070500 Sobic004G055100--Sobic010G070500 Sobic003G078200 Sobic003G078200 Sobic004G055100--Sobic003G078200 Sobic010G251600 Sobic010G251600 Sobic004G055100--Sobic010G251600 Sobic009G054800 Sobic009G054800 Sobic004G055100--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic004G055100--Sobic010G206200 Sobic002G414700 Sobic002G414700 Sobic004G055100--Sobic002G414700 Sobic003G436700 Sobic003G436700 Sobic004G055100--Sobic003G436700 Sobic001G226500 Sobic001G226500 Sobic004G055100--Sobic001G226500 Sobic001G175300 Sobic001G175300 Sobic004G055100--Sobic001G175300 Sobic010G070500--Sobic001G226500 Sobic004G008400 Sobic004G008400 Sobic010G070500--Sobic004G008400 Sobic008G108601 Sobic008G108601 Sobic010G070500--Sobic008G108601 Sobic010G070500--Sobic010G251600 Sobic010G070500--Sobic004G055100 Sobic002G179300 Sobic002G179300 Sobic010G070500--Sobic002G179300 Sobic002G286900 Sobic002G286900 Sobic010G070500--Sobic002G286900 Sobic010G070500--Sobic003G078200 Sobic003G249700 Sobic003G249700 Sobic010G070500--Sobic003G249700 Sobic002G372400 Sobic002G372400 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic003G078200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic003G078200--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic009G050300 Sobic009G050300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic003G078200--Sobic006G116700 Sobic010G251600--Sobic010G206200 Sobic007G019400 Sobic007G019400 Sobic010G251600--Sobic007G019400 Sobic010G251600--Sobic003G436700 Sobic007G178600 Sobic007G178600 Sobic010G251600--Sobic007G178600 Sobic009G215200 Sobic009G215200 Sobic010G251600--Sobic009G215200 Sobic010G251600--Sobic006G116700 Sobic010G251600--Sobic003G078200 Sobic001G054900 Sobic001G054900 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic009G054800--Sobic003G078200 Sobic009G054800--Sobic010G206200 Sobic009G054800--Sobic002G372400 Sobic009G054800--Sobic005G019700 Sobic009G054800--Sobic007G197800 Sobic010G230700 Sobic010G230700 Sobic009G054800--Sobic010G230700 Sobic009G054800--Sobic009G050300 Sobic004G198400 Sobic004G198400 Sobic009G054800--Sobic004G198400 Sobic009G054800--Sobic006G116700 Sobic010G206200--Sobic009G050300 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic010G206200--Sobic003G078200 Sobic010G206200--Sobic007G019400 Sobic004G271400 Sobic004G271400 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic002G414700--Sobic003G078200 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic003G436700--Sobic004G008400 Sobic003G436700--Sobic006G116700 Sobic003G436700--Sobic009G050300 Sobic003G436700--Sobic010G251600 Sobic003G436700--Sobic006G067800 Sobic003G436700--Sobic007G178600 Sobic002G081600 Sobic002G081600 Sobic003G436700--Sobic002G081600 Sobic003G436700--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic003G436700--Sobic002G379500 Sobic001G226500--Sobic003G249700 Sobic001G226500--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic001G226500--Sobic009G076400 Sobic001G226500--Sobic004G008400 Sobic001G226500--Sobic002G286900 Sobic007G053300 Sobic007G053300 Sobic001G226500--Sobic007G053300 Sobic006G213000 Sobic006G213000 Sobic001G226500--Sobic006G213000 Sobic001G130301 Sobic001G130301 Sobic001G226500--Sobic001G130301 Sobic001G226500--Sobic009G054800 Sobic001G175300--Sobic010G206200 Sobic001G175300--Sobic001G403500 Sobic001G175300--Sobic004G198400 Sobic001G175300--Sobic009G050300 Sobic001G175300--Sobic003G078200 Sobic001G175300--Sobic009G054800 Sobic001G175300--Sobic002G286900 Sobic009G242300 Sobic009G242300 Sobic001G175300--Sobic009G242300 Sobic001G175300--Sobic002G372400
Octagon: transcription factors


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