Gene annotation
Transcriptome id Sobic.009G242300.3
Synonym Sb09g029390
Functional annotation 60S acidic ribosomal protein, putative, expressed
UniProt A0A1Z5R3Y1
Pfam PF00428
Panther DB PTHR21141 PTHR21141:SF50
NCBI CDD KOG3449; 60S acidic ribosomal protein P2
KEGG Orthology K02943; RP-LP2, large subunit ribosomal protein LP2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44590 : 60S acidic ribosomal protein family
RAP-DB (Rice) LOC_Os01g09510.4 : 60S acidic ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a009372 , Zm00025a057342 , Zm00025a036682 , Zm00025a036683 , Zm00025a036680 , Zm00025a036681
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G242300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
2 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
3 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
4 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
5 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
6 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
7 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
8 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
9 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
10 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
11 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
12 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
13 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
14 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
15 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
16 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
17 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
18 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
19 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
20 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e


Gene co-expression network
sample Sobic009G242300 Sobic009G242300 Sobic001G175300 Sobic001G175300 Sobic009G242300--Sobic001G175300 Sobic007G197800 Sobic007G197800 Sobic009G242300--Sobic007G197800 Sobic006G067800 Sobic006G067800 Sobic009G242300--Sobic006G067800 Sobic009G050300 Sobic009G050300 Sobic009G242300--Sobic009G050300 Sobic004G008400 Sobic004G008400 Sobic009G242300--Sobic004G008400 Sobic002G379500 Sobic002G379500 Sobic009G242300--Sobic002G379500 Sobic001G018900 Sobic001G018900 Sobic009G242300--Sobic001G018900 Sobic001G402050 Sobic001G402050 Sobic009G242300--Sobic001G402050 Sobic002G286900 Sobic002G286900 Sobic009G242300--Sobic002G286900 Sobic010G206200 Sobic010G206200 Sobic001G175300--Sobic010G206200 Sobic001G403500 Sobic001G403500 Sobic001G175300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic001G175300--Sobic004G198400 Sobic001G175300--Sobic009G050300 Sobic003G078200 Sobic003G078200 Sobic001G175300--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic001G175300--Sobic009G054800 Sobic001G175300--Sobic002G286900 Sobic001G175300--Sobic009G242300 Sobic002G372400 Sobic002G372400 Sobic001G175300--Sobic002G372400 Sobic006G116700 Sobic006G116700 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic001G130301 Sobic001G130301 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic009G215200 Sobic009G215200 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic001G016400 Sobic001G016400 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic002G200600 Sobic002G200600 Sobic006G067800--Sobic002G200600 Sobic002G081600 Sobic002G081600 Sobic006G067800--Sobic002G081600 Sobic006G067800--Sobic001G402050 Sobic006G067800--Sobic006G116700 Sobic006G067800--Sobic009G050300 Sobic006G067800--Sobic009G215200 Sobic006G067800--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic006G067800--Sobic003G436700 Sobic006G067800--Sobic001G130301 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic004G008400--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic004G008400--Sobic003G436700 Sobic006G137100 Sobic006G137100 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic002G379500--Sobic009G050300 Sobic006G213000 Sobic006G213000 Sobic002G379500--Sobic006G213000 Sobic002G056200 Sobic002G056200 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic002G379500--Sobic007G197800 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic001G402050--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic001G402050--Sobic001G374700 Sobic007G184600 Sobic007G184600 Sobic001G402050--Sobic007G184600 Sobic001G402050--Sobic007G197800 Sobic001G402050--Sobic006G067800 Sobic001G402050--Sobic001G016400 Sobic001G402050--Sobic009G215200 Sobic001G402050--Sobic001G130301 Sobic001G493001 Sobic001G493001 Sobic001G402050--Sobic001G493001 Sobic002G286900--Sobic006G137100 Sobic008G108601 Sobic008G108601 Sobic002G286900--Sobic008G108601 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic001G226500 Sobic001G226500 Sobic002G286900--Sobic001G226500 Sobic002G286900--Sobic001G403500 Sobic003G249700 Sobic003G249700 Sobic002G286900--Sobic003G249700 Sobic005G110800 Sobic005G110800 Sobic002G286900--Sobic005G110800 Sobic002G286900--Sobic007G178600
Octagon: transcription factors


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