Gene annotation
Transcriptome id Sobic.001G084900.1
Synonym Sb01g007650
Functional annotation expressed protein
UniProt Q8LKT8 , C5X079
Pfam PF03669
Panther DB PTHR13193 PTHR13193:SF0
NCBI CDD KOG3462; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G07960 : -
RAP-DB (Rice) LOC_Os03g54980.1 : expressed protein
MaizeGDB (Corn) Zm00025a008211
Brachypodium KQK13119
Barley HORVU5Hr1G096200.7 , HORVU5Hr1G096200.2 , HORVU5Hr1G096200.3 , HORVU5Hr1G096200.1
Wheat TraesCS5D02G403300 , TraesCS5B02G398300 , TraesCS5A02G393800
Populus -


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cDNA sequences
Sobic.001G084900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
2 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
3 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
4 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
5 Sobic.002G190900 expressed protein -
6 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
7 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
8 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
9 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
10 Sobic.005G110800 - -
11 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
12 Sobic.001G445800 expressed protein -
13 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
14 Sobic.004G333500 proteasome maturation factor UMP1 family protein, expressed K11599: POMP, proteasome maturation protein
15 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
16 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
17 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
18 Sobic.004G026400 expressed protein -
19 Sobic.010G154700 - -
20 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1


Gene co-expression network
sample Sobic001G084900 Sobic001G084900 Sobic010G106200 Sobic010G106200 Sobic001G084900--Sobic010G106200 Sobic006G147000 Sobic006G147000 Sobic001G084900--Sobic006G147000 Sobic009G180000 Sobic009G180000 Sobic001G084900--Sobic009G180000 Sobic010G153100 Sobic010G153100 Sobic001G084900--Sobic010G153100 Sobic002G190900 Sobic002G190900 Sobic001G084900--Sobic002G190900 Sobic003G155400 Sobic003G155400 Sobic001G084900--Sobic003G155400 Sobic003G072300 Sobic003G072300 Sobic001G084900--Sobic003G072300 Sobic002G081600 Sobic002G081600 Sobic001G084900--Sobic002G081600 Sobic002G187500 Sobic002G187500 Sobic001G084900--Sobic002G187500 Sobic010G106200--Sobic001G084900 Sobic001G175300 Sobic001G175300 Sobic010G106200--Sobic001G175300 Sobic001G403500 Sobic001G403500 Sobic010G106200--Sobic001G403500 Sobic002G049300 Sobic002G049300 Sobic010G106200--Sobic002G049300 Sobic007G190800 Sobic007G190800 Sobic010G106200--Sobic007G190800 Sobic010G204500 Sobic010G204500 Sobic010G106200--Sobic010G204500 Sobic009G022400 Sobic009G022400 Sobic010G106200--Sobic009G022400 Sobic001G377800 Sobic001G377800 Sobic010G106200--Sobic001G377800 Sobic002G286900 Sobic002G286900 Sobic010G106200--Sobic002G286900 Sobic003G346600 Sobic003G346600 Sobic006G147000--Sobic003G346600 Sobic009G163800 Sobic009G163800 Sobic006G147000--Sobic009G163800 Sobic010G060500 Sobic010G060500 Sobic006G147000--Sobic010G060500 Sobic009G166500 Sobic009G166500 Sobic006G147000--Sobic009G166500 Sobic006G147000--Sobic002G081600 Sobic007G178600 Sobic007G178600 Sobic006G147000--Sobic007G178600 Sobic003G322400 Sobic003G322400 Sobic006G147000--Sobic003G322400 Sobic009G050300 Sobic009G050300 Sobic006G147000--Sobic009G050300 Sobic007G212600 Sobic007G212600 Sobic006G147000--Sobic007G212600 Sobic009G180000--Sobic010G204500 Sobic007G018300 Sobic007G018300 Sobic009G180000--Sobic007G018300 Sobic001G533500 Sobic001G533500 Sobic009G180000--Sobic001G533500 Sobic001G016400 Sobic001G016400 Sobic009G180000--Sobic001G016400 Sobic001G483100 Sobic001G483100 Sobic009G180000--Sobic001G483100 Sobic003G125650 Sobic003G125650 Sobic009G180000--Sobic003G125650 Sobic009G180000--Sobic007G190800 Sobic010G230700 Sobic010G230700 Sobic009G180000--Sobic010G230700 Sobic009G180000--Sobic009G050300 Sobic010G153100--Sobic001G084900 Sobic001G224400 Sobic001G224400 Sobic010G153100--Sobic001G224400 Sobic010G153100--Sobic003G155400 Sobic001G445800 Sobic001G445800 Sobic010G153100--Sobic001G445800 Sobic010G154700 Sobic010G154700 Sobic010G153100--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic010G153100--Sobic010G213400 Sobic007G115100 Sobic007G115100 Sobic010G153100--Sobic007G115100 Sobic001G067601 Sobic001G067601 Sobic010G153100--Sobic001G067601 Sobic006G141500 Sobic006G141500 Sobic010G153100--Sobic006G141500 Sobic002G398901 Sobic002G398901 Sobic002G190900--Sobic002G398901 Sobic010G012500 Sobic010G012500 Sobic002G190900--Sobic010G012500 Sobic007G051000 Sobic007G051000 Sobic002G190900--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic002G190900--Sobic009G176000 Sobic002G190900--Sobic002G081600 Sobic005G188100 Sobic005G188100 Sobic002G190900--Sobic005G188100 Sobic001G281400 Sobic001G281400 Sobic002G190900--Sobic001G281400 Sobic004G211833 Sobic004G211833 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic003G072300--Sobic002G081600 Sobic004G205100 Sobic004G205100 Sobic003G072300--Sobic004G205100 Sobic003G072300--Sobic002G187500 Sobic003G072300--Sobic003G209000 Sobic003G072300--Sobic002G190900 Sobic006G213000 Sobic006G213000 Sobic003G072300--Sobic006G213000 Sobic003G072300--Sobic010G204500 Sobic003G072300--Sobic003G155400 Sobic002G379500 Sobic002G379500 Sobic003G072300--Sobic002G379500 Sobic002G081600--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic002G081600--Sobic009G215200 Sobic002G081600--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic003G285800 Sobic003G285800 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700
Octagon: transcription factors


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