Gene annotation
Transcriptome id Sobic.004G333500.1,Sobic.004G333500.2
Synonym Sb04g036190
Functional annotation proteasome maturation factor UMP1 family protein, expressed
UniProt A0A194YSS0 , A0A194YTW9
Pfam PF05348
Panther DB PTHR12828 PTHR12828:SF3
NCBI CDD KOG3061; Proteasome maturation factor
KEGG Orthology K11599; POMP, proteasome maturation protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67250 : Proteasome maturation factor UMP1
RAP-DB (Rice) LOC_Os02g55720.1,LOC_Os02g55640.1 : proteasome maturation factor UMP1 family protein, expressed,cyclin, N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022503 , Zm00025a038001
Brachypodium -
Barley -
Wheat TraesCS6A02G367200
Populus -


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cDNA sequences
Sobic.004G333500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
2 Sobic.001G084900 expressed protein -
3 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
4 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
5 Sobic.006G083500 SLL1 protein, putative, expressed -
6 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
7 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
8 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
9 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
10 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
11 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
12 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
13 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
14 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.007G177200 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
16 Sobic.005G110800 - -
17 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
18 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
19 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
20 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1


Gene co-expression network
sample Sobic004G333500 Sobic004G333500 Sobic009G180000 Sobic009G180000 Sobic004G333500--Sobic009G180000 Sobic001G084900 Sobic001G084900 Sobic004G333500--Sobic001G084900 Sobic003G215700 Sobic003G215700 Sobic004G333500--Sobic003G215700 Sobic007G018300 Sobic007G018300 Sobic004G333500--Sobic007G018300 Sobic006G083500 Sobic006G083500 Sobic004G333500--Sobic006G083500 Sobic001G483100 Sobic001G483100 Sobic004G333500--Sobic001G483100 Sobic001G533500 Sobic001G533500 Sobic004G333500--Sobic001G533500 Sobic001G537200 Sobic001G537200 Sobic004G333500--Sobic001G537200 Sobic010G204500 Sobic010G204500 Sobic004G333500--Sobic010G204500 Sobic009G180000--Sobic010G204500 Sobic009G180000--Sobic007G018300 Sobic009G180000--Sobic001G533500 Sobic001G016400 Sobic001G016400 Sobic009G180000--Sobic001G016400 Sobic009G180000--Sobic001G483100 Sobic003G125650 Sobic003G125650 Sobic009G180000--Sobic003G125650 Sobic007G190800 Sobic007G190800 Sobic009G180000--Sobic007G190800 Sobic010G230700 Sobic010G230700 Sobic009G180000--Sobic010G230700 Sobic009G050300 Sobic009G050300 Sobic009G180000--Sobic009G050300 Sobic010G106200 Sobic010G106200 Sobic001G084900--Sobic010G106200 Sobic006G147000 Sobic006G147000 Sobic001G084900--Sobic006G147000 Sobic001G084900--Sobic009G180000 Sobic010G153100 Sobic010G153100 Sobic001G084900--Sobic010G153100 Sobic002G190900 Sobic002G190900 Sobic001G084900--Sobic002G190900 Sobic003G155400 Sobic003G155400 Sobic001G084900--Sobic003G155400 Sobic003G072300 Sobic003G072300 Sobic001G084900--Sobic003G072300 Sobic002G081600 Sobic002G081600 Sobic001G084900--Sobic002G081600 Sobic002G187500 Sobic002G187500 Sobic001G084900--Sobic002G187500 Sobic003G215700--Sobic006G083500 Sobic002G418400 Sobic002G418400 Sobic003G215700--Sobic002G418400 Sobic001G047800 Sobic001G047800 Sobic003G215700--Sobic001G047800 Sobic003G209000 Sobic003G209000 Sobic003G215700--Sobic003G209000 Sobic004G211833 Sobic004G211833 Sobic003G215700--Sobic004G211833 Sobic001G404800 Sobic001G404800 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic010G012500 Sobic010G012500 Sobic003G215700--Sobic010G012500 Sobic007G018300--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G018300--Sobic005G019700 Sobic009G215200 Sobic009G215200 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic007G018300--Sobic006G116700 Sobic007G018300--Sobic001G016400 Sobic007G019000 Sobic007G019000 Sobic007G018300--Sobic007G019000 Sobic007G197800 Sobic007G197800 Sobic007G018300--Sobic007G197800 Sobic001G054900 Sobic001G054900 Sobic007G018300--Sobic001G054900 Sobic006G083500--Sobic004G211833 Sobic006G083500--Sobic010G012500 Sobic006G083500--Sobic003G215700 Sobic006G083500--Sobic002G418400 Sobic009G176000 Sobic009G176000 Sobic006G083500--Sobic009G176000 Sobic002G398901 Sobic002G398901 Sobic006G083500--Sobic002G398901 Sobic006G083500--Sobic003G209000 Sobic007G051000 Sobic007G051000 Sobic006G083500--Sobic007G051000 Sobic006G083500--Sobic001G134400 Sobic001G483100--Sobic010G204500 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic002G056200 Sobic002G056200 Sobic001G483100--Sobic002G056200 Sobic003G249700 Sobic003G249700 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic002G379500 Sobic002G379500 Sobic001G483100--Sobic002G379500 Sobic001G483100--Sobic001G537200 Sobic003G109600 Sobic003G109600 Sobic001G483100--Sobic003G109600 Sobic001G533500--Sobic007G019000 Sobic001G533500--Sobic007G018300 Sobic001G533500--Sobic010G230700 Sobic001G533500--Sobic001G054900 Sobic001G533500--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic001G533500--Sobic007G178600 Sobic001G533500--Sobic006G116700 Sobic004G104100 Sobic004G104100 Sobic001G533500--Sobic004G104100 Sobic004G008400 Sobic004G008400 Sobic001G533500--Sobic004G008400 Sobic001G537200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic001G537200--Sobic001G018900 Sobic001G537200--Sobic007G197800 Sobic001G537200--Sobic002G379500 Sobic001G537200--Sobic009G215200 Sobic001G537200--Sobic007G019000 Sobic001G537200--Sobic006G116700 Sobic001G130301 Sobic001G130301 Sobic001G537200--Sobic001G130301 Sobic001G403500 Sobic001G403500 Sobic001G537200--Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic010G204500--Sobic001G483100 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic010G204500--Sobic009G180000 Sobic010G204500--Sobic002G056200 Sobic010G204500--Sobic002G081600 Sobic010G204500--Sobic009G215200 Sobic010G204500--Sobic001G018900
Octagon: transcription factors


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