Gene annotation
Transcriptome id Sobic.007G177200.1
Synonym PAD2, Sb07g024900
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5YH32
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF15
NCBI CDD KOG0183; 20S proteasome, regulatory subunit alpha type PSMA7/PRE6
KEGG Orthology K02731; 20S proteasome subunit alpha 4
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G66140 : proteasome alpha subunit D2
RAP-DB (Rice) LOC_Os08g43540.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a014456 , Zm00025a034216 , Zm00025a049340
Brachypodium KQJ99289 , KQJ91233
Barley HORVU2Hr1G060310.6 , HORVU7Hr1G057390.1 , HORVU7Hr1G057390.2 , HORVU4Hr1G042970.16 , HORVU4Hr1G042970.10 , HORVU6Hr1G051730.1 , HORVU4Hr1G042970.6 , HORVU1Hr1G015690.1 , HORVU1Hr1G015690.2 , HORVU5Hr1G083350.1 , HORVU2Hr1G060310.7 , HORVU2Hr1G060310.4 , HORVU2Hr1G060310.5
Wheat TraesCS5B02G329400 , TraesCS7B02G170000 , TraesCS7D02G272300 , TraesCS7A02G272000 , TraesCS5A02G329300
Populus -


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cDNA sequences
Sobic.007G177200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G296200 expressed protein -
2 Sobic.008G127500 expressed protein -
3 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
4 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
5 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
6 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
7 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
8 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
9 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
10 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
11 Sobic.004G333500 proteasome maturation factor UMP1 family protein, expressed K11599: POMP, proteasome maturation protein
12 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
13 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
14 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
15 Sobic.001G172000 expressed protein -
16 Sobic.007G134900 expressed protein -
17 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
18 Sobic.001G134400 CHCH domain containing protein, expressed -
19 Sobic.001G304400 expressed protein -
20 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1


Gene co-expression network
sample Sobic007G177200 Sobic007G177200 Sobic002G296200 Sobic002G296200 Sobic007G177200--Sobic002G296200 Sobic008G127500 Sobic008G127500 Sobic007G177200--Sobic008G127500 Sobic003G215700 Sobic003G215700 Sobic007G177200--Sobic003G215700 Sobic001G342200 Sobic001G342200 Sobic007G177200--Sobic001G342200 Sobic003G129800 Sobic003G129800 Sobic007G177200--Sobic003G129800 Sobic001G058900 Sobic001G058900 Sobic007G177200--Sobic001G058900 Sobic004G066800 Sobic004G066800 Sobic007G177200--Sobic004G066800 Sobic001G057300 Sobic001G057300 Sobic007G177200--Sobic001G057300 Sobic001G286200 Sobic001G286200 Sobic007G177200--Sobic001G286200 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic007G134900 Sobic007G134900 Sobic002G296200--Sobic007G134900 Sobic001G074700 Sobic001G074700 Sobic002G296200--Sobic001G074700 Sobic002G296200--Sobic003G215700 Sobic002G309700 Sobic002G309700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic001G047800 Sobic001G047800 Sobic002G296200--Sobic001G047800 Sobic002G296200--Sobic001G286200 Sobic002G296200--Sobic003G129800 Sobic010G018400 Sobic010G018400 Sobic008G127500--Sobic010G018400 Sobic010G054200 Sobic010G054200 Sobic008G127500--Sobic010G054200 Sobic001G304400 Sobic001G304400 Sobic008G127500--Sobic001G304400 Sobic008G127500--Sobic007G177200 Sobic010G065400 Sobic010G065400 Sobic008G127500--Sobic010G065400 Sobic008G127500--Sobic003G129800 Sobic003G368500 Sobic003G368500 Sobic008G127500--Sobic003G368500 Sobic008G127500--Sobic001G058900 Sobic001G172000 Sobic001G172000 Sobic008G127500--Sobic001G172000 Sobic006G083500 Sobic006G083500 Sobic003G215700--Sobic006G083500 Sobic002G418400 Sobic002G418400 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G209000 Sobic003G209000 Sobic003G215700--Sobic003G209000 Sobic004G211833 Sobic004G211833 Sobic003G215700--Sobic004G211833 Sobic001G404800 Sobic001G404800 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic003G215700--Sobic001G134400 Sobic010G012500 Sobic010G012500 Sobic003G215700--Sobic010G012500 Sobic001G342200--Sobic001G057300 Sobic001G060300 Sobic001G060300 Sobic001G342200--Sobic001G060300 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic004G170400 Sobic004G170400 Sobic001G342200--Sobic004G170400 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G249700 Sobic003G249700 Sobic003G129800--Sobic003G249700 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic009G233400 Sobic009G233400 Sobic001G058900--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic002G049300 Sobic002G049300 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic004G066800--Sobic005G111100 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic006G216600 Sobic006G216600 Sobic001G057300--Sobic006G216600 Sobic001G057300--Sobic002G304900 Sobic001G057300--Sobic008G135000 Sobic001G057300--Sobic001G058900 Sobic001G057300--Sobic001G334300 Sobic001G057300--Sobic001G085400 Sobic006G035900 Sobic006G035900 Sobic001G057300--Sobic006G035900 Sobic001G057300--Sobic002G115000 Sobic003G387900 Sobic003G387900 Sobic001G057300--Sobic003G387900 Sobic002G078300 Sobic002G078300 Sobic001G286200--Sobic002G078300 Sobic010G264300 Sobic010G264300 Sobic001G286200--Sobic010G264300 Sobic001G286200--Sobic001G304400 Sobic007G211500 Sobic007G211500 Sobic001G286200--Sobic007G211500 Sobic001G286200--Sobic002G296200 Sobic001G286200--Sobic007G134900 Sobic009G212200 Sobic009G212200 Sobic001G286200--Sobic009G212200 Sobic002G308300 Sobic002G308300 Sobic001G286200--Sobic002G308300 Sobic002G263100 Sobic002G263100 Sobic001G286200--Sobic002G263100
Octagon: transcription factors


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