Gene annotation
Transcriptome id Sobic.008G127500.1
Synonym Sb08g017880
Functional annotation expressed protein
UniProt C5YPR6
Pfam PF13664
Panther DB PTHR23241 PTHR23241:SF55
NCBI CDD KOG2886; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62580 : Late embryogenesis abundant protein (LEA) family protein
RAP-DB (Rice) LOC_Os11g44940.1 : seed maturation protein PM27, putative, expressed
MaizeGDB (Corn) Zm00025a025484 , Zm00025a004129
Brachypodium KQJ86345
Barley HORVU5Hr1G023190.2 , HORVU5Hr1G023190.1
Wheat TraesCS4D02G144000 , TraesCS5A02G089500 , TraesCS5D02G101600
Populus -


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cDNA sequences
Sobic.008G127500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
2 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
3 Sobic.001G304400 expressed protein -
4 Sobic.007G177200 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
5 Sobic.010G065400 X0001, putative, expressed -
6 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
7 Sobic.003G368500 Yip1 domain containing protein, expressed -
8 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
9 Sobic.001G172000 expressed protein -
10 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
11 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
12 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
13 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
14 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
15 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
16 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
17 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
18 Sobic.009G212200 expressed protein -
19 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
20 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e


Gene co-expression network
sample Sobic008G127500 Sobic008G127500 Sobic010G018400 Sobic010G018400 Sobic008G127500--Sobic010G018400 Sobic010G054200 Sobic010G054200 Sobic008G127500--Sobic010G054200 Sobic001G304400 Sobic001G304400 Sobic008G127500--Sobic001G304400 Sobic007G177200 Sobic007G177200 Sobic008G127500--Sobic007G177200 Sobic010G065400 Sobic010G065400 Sobic008G127500--Sobic010G065400 Sobic003G129800 Sobic003G129800 Sobic008G127500--Sobic003G129800 Sobic003G368500 Sobic003G368500 Sobic008G127500--Sobic003G368500 Sobic001G058900 Sobic001G058900 Sobic008G127500--Sobic001G058900 Sobic001G172000 Sobic001G172000 Sobic008G127500--Sobic001G172000 Sobic008G129400 Sobic008G129400 Sobic010G018400--Sobic008G129400 Sobic010G018400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic010G018400--Sobic003G155400 Sobic009G176000 Sobic009G176000 Sobic010G018400--Sobic009G176000 Sobic007G051000 Sobic007G051000 Sobic010G018400--Sobic007G051000 Sobic010G154700 Sobic010G154700 Sobic010G018400--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic010G018400--Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic010G018400--Sobic001G048832 Sobic001G445800 Sobic001G445800 Sobic010G018400--Sobic001G445800 Sobic006G081100 Sobic006G081100 Sobic010G054200--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic010G054200--Sobic003G249700 Sobic010G054200--Sobic001G058900 Sobic009G223300 Sobic009G223300 Sobic010G054200--Sobic009G223300 Sobic010G054200--Sobic003G129800 Sobic001G225700 Sobic001G225700 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic003G150000 Sobic003G150000 Sobic010G054200--Sobic003G150000 Sobic002G372400 Sobic002G372400 Sobic010G054200--Sobic002G372400 Sobic003G443300 Sobic003G443300 Sobic001G304400--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic001G304400--Sobic001G432000 Sobic001G286200 Sobic001G286200 Sobic001G304400--Sobic001G286200 Sobic001G304400--Sobic003G249700 Sobic009G212200 Sobic009G212200 Sobic001G304400--Sobic009G212200 Sobic007G019400 Sobic007G019400 Sobic001G304400--Sobic007G019400 Sobic002G304900 Sobic002G304900 Sobic001G304400--Sobic002G304900 Sobic001G304400--Sobic003G150000 Sobic009G062000 Sobic009G062000 Sobic001G304400--Sobic009G062000 Sobic002G296200 Sobic002G296200 Sobic007G177200--Sobic002G296200 Sobic007G177200--Sobic008G127500 Sobic003G215700 Sobic003G215700 Sobic007G177200--Sobic003G215700 Sobic001G342200 Sobic001G342200 Sobic007G177200--Sobic001G342200 Sobic007G177200--Sobic003G129800 Sobic007G177200--Sobic001G058900 Sobic004G066800 Sobic004G066800 Sobic007G177200--Sobic004G066800 Sobic001G057300 Sobic001G057300 Sobic007G177200--Sobic001G057300 Sobic007G177200--Sobic001G286200 Sobic002G078400 Sobic002G078400 Sobic010G065400--Sobic002G078400 Sobic010G065400--Sobic008G127500 Sobic008G132800 Sobic008G132800 Sobic010G065400--Sobic008G132800 Sobic001G502200 Sobic001G502200 Sobic010G065400--Sobic001G502200 Sobic001G315500 Sobic001G315500 Sobic010G065400--Sobic001G315500 Sobic004G196300 Sobic004G196300 Sobic010G065400--Sobic004G196300 Sobic003G362400 Sobic003G362400 Sobic010G065400--Sobic003G362400 Sobic005G111100 Sobic005G111100 Sobic010G065400--Sobic005G111100 Sobic009G198500 Sobic009G198500 Sobic010G065400--Sobic009G198500 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic003G129800--Sobic005G111100 Sobic003G129800--Sobic002G304900 Sobic003G129800--Sobic003G249700 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic003G129800--Sobic009G223300 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic010G213400 Sobic010G213400 Sobic003G368500--Sobic010G213400 Sobic003G368500--Sobic010G018400 Sobic001G224400 Sobic001G224400 Sobic003G368500--Sobic001G224400 Sobic003G368500--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G368500--Sobic004G310300 Sobic004G284500 Sobic004G284500 Sobic003G368500--Sobic004G284500 Sobic005G188100 Sobic005G188100 Sobic003G368500--Sobic005G188100 Sobic003G368500--Sobic007G051000 Sobic001G418900 Sobic001G418900 Sobic003G368500--Sobic001G418900 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic002G049300 Sobic002G049300 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic001G014500 Sobic001G014500 Sobic001G172000--Sobic001G014500 Sobic005G110800 Sobic005G110800 Sobic001G172000--Sobic005G110800 Sobic009G119900 Sobic009G119900 Sobic001G172000--Sobic009G119900 Sobic001G025600 Sobic001G025600 Sobic001G172000--Sobic001G025600 Sobic001G377800 Sobic001G377800 Sobic001G172000--Sobic001G377800 Sobic001G172000--Sobic006G081100 Sobic004G103700 Sobic004G103700 Sobic001G172000--Sobic004G103700 Sobic001G172000--Sobic007G019400 Sobic001G172000--Sobic003G249700
Octagon: transcription factors


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