Gene annotation
Transcriptome id Sobic.001G077000.1
Synonym ATCOR413-PM2, Sb01g006960, COR413-PM2
Functional annotation similar to Cold acclimation protein COR413-PM1 (PubMedID : 29862293)
cold acclimation protein WCOR413, putative, expressed
UniProt C5WZ92
Pfam PF05562
Panther DB PTHR33596 PTHR33596:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50830 : cold-regulated 413-plasma membrane 2
RAP-DB (Rice) LOC_Os03g55850.1 : cold acclimation protein WCOR413, putative, expressed
MaizeGDB (Corn) Zm00025a016703 , Zm00025a008320
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G077000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
2 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
3 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
4 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
5 Sobic.002G296200 expressed protein -
6 Sobic.006G083500 SLL1 protein, putative, expressed -
7 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
8 Sobic.004G060500 fiber protein Fb15, putative, expressed -
9 Sobic.003G296800 expressed protein -
10 Sobic.001G084900 expressed protein -
11 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
12 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
13 Sobic.001G197000 dehydration response related protein, putative, expressed -
14 Sobic.002G190900 expressed protein -
15 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
16 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
17 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
18 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
19 Sobic.002G398901 - -
20 Sobic.006G262300 expressed protein -


Gene co-expression network
sample Sobic001G077000 Sobic001G077000 Sobic003G072300 Sobic003G072300 Sobic001G077000--Sobic003G072300 Sobic002G418400 Sobic002G418400 Sobic001G077000--Sobic002G418400 Sobic003G155400 Sobic003G155400 Sobic001G077000--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic001G077000--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic001G077000--Sobic002G296200 Sobic006G083500 Sobic006G083500 Sobic001G077000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic001G077000--Sobic003G215700 Sobic004G060500 Sobic004G060500 Sobic001G077000--Sobic004G060500 Sobic003G296800 Sobic003G296800 Sobic001G077000--Sobic003G296800 Sobic002G081600 Sobic002G081600 Sobic003G072300--Sobic002G081600 Sobic004G205100 Sobic004G205100 Sobic003G072300--Sobic004G205100 Sobic002G187500 Sobic002G187500 Sobic003G072300--Sobic002G187500 Sobic003G072300--Sobic003G209000 Sobic002G190900 Sobic002G190900 Sobic003G072300--Sobic002G190900 Sobic006G213000 Sobic006G213000 Sobic003G072300--Sobic006G213000 Sobic010G204500 Sobic010G204500 Sobic003G072300--Sobic010G204500 Sobic003G072300--Sobic003G155400 Sobic002G379500 Sobic002G379500 Sobic003G072300--Sobic002G379500 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G398901 Sobic002G398901 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic001G047800 Sobic001G047800 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic002G418400--Sobic001G404800 Sobic010G154700 Sobic010G154700 Sobic003G155400--Sobic010G154700 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic007G051000 Sobic007G051000 Sobic003G155400--Sobic007G051000 Sobic003G155400--Sobic010G204500 Sobic003G155400--Sobic003G215700 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic003G209000--Sobic006G083500 Sobic003G209000--Sobic003G215700 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic003G209000--Sobic002G398901 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic007G134900 Sobic007G134900 Sobic002G296200--Sobic007G134900 Sobic001G074700 Sobic001G074700 Sobic002G296200--Sobic001G074700 Sobic002G296200--Sobic003G215700 Sobic002G309700 Sobic002G309700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic002G296200--Sobic001G047800 Sobic001G286200 Sobic001G286200 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic006G083500--Sobic004G211833 Sobic006G083500--Sobic010G012500 Sobic006G083500--Sobic003G215700 Sobic006G083500--Sobic002G418400 Sobic009G176000 Sobic009G176000 Sobic006G083500--Sobic009G176000 Sobic006G083500--Sobic002G398901 Sobic006G083500--Sobic003G209000 Sobic006G083500--Sobic007G051000 Sobic006G083500--Sobic001G134400 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic003G215700--Sobic004G060500 Sobic003G215700--Sobic001G134400 Sobic003G215700--Sobic010G012500 Sobic004G060500--Sobic003G215700 Sobic004G060500--Sobic009G176000 Sobic001G519000 Sobic001G519000 Sobic004G060500--Sobic001G519000 Sobic004G060500--Sobic001G047800 Sobic004G060500--Sobic006G083500 Sobic004G060500--Sobic002G418400 Sobic004G060500--Sobic002G309700 Sobic004G060500--Sobic002G296200 Sobic010G059300 Sobic010G059300 Sobic004G060500--Sobic010G059300 Sobic003G296800--Sobic001G047800 Sobic003G296800--Sobic003G215700 Sobic002G263100 Sobic002G263100 Sobic003G296800--Sobic002G263100 Sobic003G296800--Sobic002G296200 Sobic004G183200 Sobic004G183200 Sobic003G296800--Sobic004G183200 Sobic003G296800--Sobic001G404800 Sobic006G262300 Sobic006G262300 Sobic003G296800--Sobic006G262300 Sobic003G296800--Sobic002G309700 Sobic003G296800--Sobic004G060500
Octagon: transcription factors


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