Gene annotation
Transcriptome id Sobic.003G296800.1
Synonym Sb03g034720
Functional annotation expressed protein
UniProt C5XK48
Pfam -
Panther DB PTHR35479 PTHR35479:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31490 : -
RAP-DB (Rice) LOC_Os01g53140.1 : expressed protein
MaizeGDB (Corn) Zm00025a040044
Brachypodium KQK09746
Barley HORVU3Hr1G071870.1 , HORVU3Hr1G071870.3 , HORVU3Hr1G071870.4 , HORVU3Hr1G071870.5 , HORVU3Hr1G071870.6
Wheat TraesCS3D02G290200 , TraesCS3B02G325200 , TraesCS3A02G290400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G296800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
2 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
3 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
4 Sobic.002G296200 expressed protein -
5 Sobic.004G183200 expressed protein -
6 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
7 Sobic.006G262300 expressed protein -
8 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
9 Sobic.004G060500 fiber protein Fb15, putative, expressed -
10 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
11 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
12 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
13 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
14 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
15 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
16 Sobic.007G134900 expressed protein -
17 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
18 Sobic.006G083500 SLL1 protein, putative, expressed -
19 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
20 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10


Gene co-expression network
sample Sobic003G296800 Sobic003G296800 Sobic001G047800 Sobic001G047800 Sobic003G296800--Sobic001G047800 Sobic003G215700 Sobic003G215700 Sobic003G296800--Sobic003G215700 Sobic002G263100 Sobic002G263100 Sobic003G296800--Sobic002G263100 Sobic002G296200 Sobic002G296200 Sobic003G296800--Sobic002G296200 Sobic004G183200 Sobic004G183200 Sobic003G296800--Sobic004G183200 Sobic001G404800 Sobic001G404800 Sobic003G296800--Sobic001G404800 Sobic006G262300 Sobic006G262300 Sobic003G296800--Sobic006G262300 Sobic002G309700 Sobic002G309700 Sobic003G296800--Sobic002G309700 Sobic004G060500 Sobic004G060500 Sobic003G296800--Sobic004G060500 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic001G047800--Sobic002G418400 Sobic004G260200 Sobic004G260200 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic001G047800--Sobic002G263100 Sobic001G047800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G047800--Sobic007G134900 Sobic001G519000 Sobic001G519000 Sobic001G047800--Sobic001G519000 Sobic006G083500 Sobic006G083500 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G209000 Sobic003G209000 Sobic003G215700--Sobic003G209000 Sobic004G211833 Sobic004G211833 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic010G012500 Sobic010G012500 Sobic003G215700--Sobic010G012500 Sobic002G263100--Sobic007G134900 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic002G263100--Sobic001G519000 Sobic002G263100--Sobic004G260200 Sobic002G263100--Sobic003G296800 Sobic002G263100--Sobic003G215700 Sobic001G286200 Sobic001G286200 Sobic002G263100--Sobic001G286200 Sobic002G263100--Sobic001G404800 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic002G296200--Sobic007G134900 Sobic001G074700 Sobic001G074700 Sobic002G296200--Sobic001G074700 Sobic002G296200--Sobic003G215700 Sobic002G296200--Sobic002G309700 Sobic002G296200--Sobic001G134400 Sobic002G296200--Sobic001G047800 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic004G183200--Sobic003G296800 Sobic004G183200--Sobic001G519000 Sobic010G059300 Sobic010G059300 Sobic004G183200--Sobic010G059300 Sobic007G211500 Sobic007G211500 Sobic004G183200--Sobic007G211500 Sobic004G183200--Sobic002G263100 Sobic004G183200--Sobic001G047800 Sobic007G161700 Sobic007G161700 Sobic004G183200--Sobic007G161700 Sobic004G183200--Sobic001G286200 Sobic004G183200--Sobic004G060500 Sobic001G404800--Sobic003G209000 Sobic004G259200 Sobic004G259200 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic002G356400 Sobic002G356400 Sobic001G404800--Sobic002G356400 Sobic001G404800--Sobic002G309700 Sobic001G404800--Sobic006G083500 Sobic001G404800--Sobic004G260200 Sobic006G261900 Sobic006G261900 Sobic006G262300--Sobic006G261900 Sobic002G375100 Sobic002G375100 Sobic006G262300--Sobic002G375100 Sobic001G432000 Sobic001G432000 Sobic006G262300--Sobic001G432000 Sobic010G251600 Sobic010G251600 Sobic006G262300--Sobic010G251600 Sobic006G262300--Sobic003G296800 Sobic002G081600 Sobic002G081600 Sobic006G262300--Sobic002G081600 Sobic006G116700 Sobic006G116700 Sobic006G262300--Sobic006G116700 Sobic003G436700 Sobic003G436700 Sobic006G262300--Sobic003G436700 Sobic001G533500 Sobic001G533500 Sobic006G262300--Sobic001G533500 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic009G215300 Sobic009G215300 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic002G309700--Sobic003G215700 Sobic004G060500--Sobic003G215700 Sobic009G176000 Sobic009G176000 Sobic004G060500--Sobic009G176000 Sobic004G060500--Sobic001G519000 Sobic004G060500--Sobic001G047800 Sobic004G060500--Sobic006G083500 Sobic004G060500--Sobic002G418400 Sobic004G060500--Sobic002G309700 Sobic004G060500--Sobic002G296200 Sobic004G060500--Sobic010G059300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.