Gene annotation
Transcriptome id Sobic.001G031800.1
Synonym Sb01g002970
Functional annotation ribosomal protein L30 containing protein, expressed
UniProt C5WUY8
Pfam PF00327
Panther DB PTHR15892 PTHR15892:SF2
NCBI CDD -
KEGG Orthology K02907; RP-L30, MRPL30, large subunit ribosomal protein L30
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55140 : ribosomal protein L30 family protein
RAP-DB (Rice) LOC_Os08g01859.1 : ribosomal protein L30 containing protein, expressed
MaizeGDB (Corn) Zm00025a008845
Brachypodium KQJ81940
Barley HORVU2Hr1G010480.1 , HORVU2Hr1G010480.3 , HORVU2Hr1G010480.2 , HORVU2Hr1G010480.4
Wheat -
Populus -


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cDNA sequences
Sobic.001G031800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G134200 expressed protein -
2 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
3 Sobic.003G296800 expressed protein -
4 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
5 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
6 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
7 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
8 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
9 Sobic.007G184001 - K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
10 Sobic.002G260200 - -
11 Sobic.002G296200 expressed protein -
12 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
13 Sobic.009G024500 50S ribosomal protein L10, chloroplast precursor, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
14 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
15 Sobic.009G077100 expressed protein -
16 Sobic.009G215300 fiber protein Fb11, putative, expressed -
17 Sobic.007G141100 expressed protein K18179: cytochrome c oxidase assembly factor 6
18 Sobic.007G134900 expressed protein -
19 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
20 Sobic.003G305100 expressed protein -


Gene co-expression network
sample Sobic001G031800 Sobic001G031800 Sobic001G134200 Sobic001G134200 Sobic001G031800--Sobic001G134200 Sobic002G263100 Sobic002G263100 Sobic001G031800--Sobic002G263100 Sobic003G296800 Sobic003G296800 Sobic001G031800--Sobic003G296800 Sobic004G260200 Sobic004G260200 Sobic001G031800--Sobic004G260200 Sobic007G013900 Sobic007G013900 Sobic001G031800--Sobic007G013900 Sobic002G309700 Sobic002G309700 Sobic001G031800--Sobic002G309700 Sobic002G246800 Sobic002G246800 Sobic001G031800--Sobic002G246800 Sobic008G136800 Sobic008G136800 Sobic001G031800--Sobic008G136800 Sobic007G184001 Sobic007G184001 Sobic001G031800--Sobic007G184001 Sobic001G134200--Sobic001G031800 Sobic001G134200--Sobic007G013900 Sobic002G260200 Sobic002G260200 Sobic001G134200--Sobic002G260200 Sobic004G183200 Sobic004G183200 Sobic001G134200--Sobic004G183200 Sobic001G148700 Sobic001G148700 Sobic001G134200--Sobic001G148700 Sobic001G134200--Sobic003G296800 Sobic001G134200--Sobic002G263100 Sobic001G134200--Sobic002G309700 Sobic004G159000 Sobic004G159000 Sobic001G134200--Sobic004G159000 Sobic007G134900 Sobic007G134900 Sobic002G263100--Sobic007G134900 Sobic001G047800 Sobic001G047800 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic001G519000 Sobic001G519000 Sobic002G263100--Sobic001G519000 Sobic002G263100--Sobic004G260200 Sobic002G263100--Sobic003G296800 Sobic003G215700 Sobic003G215700 Sobic002G263100--Sobic003G215700 Sobic001G286200 Sobic001G286200 Sobic002G263100--Sobic001G286200 Sobic001G404800 Sobic001G404800 Sobic002G263100--Sobic001G404800 Sobic003G296800--Sobic001G047800 Sobic003G296800--Sobic003G215700 Sobic003G296800--Sobic002G263100 Sobic002G296200 Sobic002G296200 Sobic003G296800--Sobic002G296200 Sobic003G296800--Sobic004G183200 Sobic003G296800--Sobic001G404800 Sobic006G262300 Sobic006G262300 Sobic003G296800--Sobic006G262300 Sobic003G296800--Sobic002G309700 Sobic004G060500 Sobic004G060500 Sobic003G296800--Sobic004G060500 Sobic004G260200--Sobic002G309700 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic002G395000 Sobic002G395000 Sobic004G260200--Sobic002G395000 Sobic002G356400 Sobic002G356400 Sobic004G260200--Sobic002G356400 Sobic004G260200--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic004G260200--Sobic009G215300 Sobic004G260200--Sobic002G263100 Sobic001G074700 Sobic001G074700 Sobic004G260200--Sobic001G074700 Sobic007G013900--Sobic009G215300 Sobic007G013900--Sobic004G159000 Sobic007G013900--Sobic002G260200 Sobic006G013000 Sobic006G013000 Sobic007G013900--Sobic006G013000 Sobic007G013900--Sobic002G309700 Sobic007G013900--Sobic001G031800 Sobic007G013900--Sobic004G260200 Sobic007G013900--Sobic002G395000 Sobic007G013900--Sobic008G136800 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic002G309700--Sobic003G215700 Sobic002G246800--Sobic001G031800 Sobic003G335300 Sobic003G335300 Sobic002G246800--Sobic003G335300 Sobic001G181500 Sobic001G181500 Sobic002G246800--Sobic001G181500 Sobic009G209001 Sobic009G209001 Sobic002G246800--Sobic009G209001 Sobic010G231700 Sobic010G231700 Sobic002G246800--Sobic010G231700 Sobic007G141100 Sobic007G141100 Sobic002G246800--Sobic007G141100 Sobic010G031000 Sobic010G031000 Sobic002G246800--Sobic010G031000 Sobic002G246800--Sobic009G215300 Sobic006G124300 Sobic006G124300 Sobic002G246800--Sobic006G124300 Sobic006G203900 Sobic006G203900 Sobic008G136800--Sobic006G203900 Sobic009G001900 Sobic009G001900 Sobic008G136800--Sobic009G001900 Sobic009G211900 Sobic009G211900 Sobic008G136800--Sobic009G211900 Sobic008G136800--Sobic007G013900 Sobic008G136800--Sobic001G031800 Sobic008G136800--Sobic006G124300 Sobic008G136800--Sobic007G141100 Sobic008G136800--Sobic002G296200 Sobic003G074900 Sobic003G074900 Sobic008G136800--Sobic003G074900 Sobic003G289601 Sobic003G289601 Sobic007G184001--Sobic003G289601 Sobic007G184001--Sobic001G031800 Sobic002G329900 Sobic002G329900 Sobic007G184001--Sobic002G329900 Sobic007G184001--Sobic009G209001 Sobic007G184001--Sobic001G047800 Sobic007G184001--Sobic002G263100 Sobic007G184001--Sobic004G260200 Sobic007G184001--Sobic002G309700 Sobic007G184001--Sobic003G296800
Octagon: transcription factors


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