Gene annotation
Transcriptome id Sobic.007G141100.1
Synonym Sb07g021670
Functional annotation expressed protein
UniProt A0A1B6PHR5
Pfam PF02297
Panther DB PTHR11387
NCBI CDD -
KEGG Orthology K18179; cytochrome c oxidase assembly factor 6
Gene Ontology GO:0005739; mitochondrion GO:0004129cytochrome-c oxidase activity


Orthologs (automatic annotation)
TAIR AT5G58005 : Cytochrome c oxidase, subunit Vib family protein
RAP-DB (Rice) LOC_Os08g34270.1 : expressed protein
MaizeGDB (Corn) Zm00025a005846
Brachypodium KQJ98431
Barley HORVU7Hr1G089040.2 , HORVU7Hr1G089040.1
Wheat TraesCS7B02G273100 , TraesCS7D02G368200 , TraesCS7A02G354600 , TraesCS7A02G354600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
2 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
3 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
4 Sobic.003G074900 expressed protein -
5 Sobic.009G001900 expressed protein -
6 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
7 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
8 Sobic.002G260200 - -
9 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
10 Sobic.009G077100 expressed protein -
11 Sobic.004G357800 phospholipase A2, putative, expressed -
12 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
13 Sobic.007G219500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
14 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
15 Sobic.003G167000 protein phosphotase protein, putative, expressed -
16 Sobic.009G209900 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
17 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
18 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
19 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
20 Sobic.007G019501 - K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic007G141100 Sobic007G141100 Sobic008G136800 Sobic008G136800 Sobic007G141100--Sobic008G136800 Sobic001G031800 Sobic001G031800 Sobic007G141100--Sobic001G031800 Sobic007G013900 Sobic007G013900 Sobic007G141100--Sobic007G013900 Sobic003G074900 Sobic003G074900 Sobic007G141100--Sobic003G074900 Sobic009G001900 Sobic009G001900 Sobic007G141100--Sobic009G001900 Sobic002G246800 Sobic002G246800 Sobic007G141100--Sobic002G246800 Sobic004G164000 Sobic004G164000 Sobic007G141100--Sobic004G164000 Sobic002G260200 Sobic002G260200 Sobic007G141100--Sobic002G260200 Sobic004G159000 Sobic004G159000 Sobic007G141100--Sobic004G159000 Sobic006G203900 Sobic006G203900 Sobic008G136800--Sobic006G203900 Sobic008G136800--Sobic009G001900 Sobic009G211900 Sobic009G211900 Sobic008G136800--Sobic009G211900 Sobic008G136800--Sobic007G013900 Sobic008G136800--Sobic001G031800 Sobic006G124300 Sobic006G124300 Sobic008G136800--Sobic006G124300 Sobic008G136800--Sobic007G141100 Sobic002G296200 Sobic002G296200 Sobic008G136800--Sobic002G296200 Sobic008G136800--Sobic003G074900 Sobic001G134200 Sobic001G134200 Sobic001G031800--Sobic001G134200 Sobic002G263100 Sobic002G263100 Sobic001G031800--Sobic002G263100 Sobic003G296800 Sobic003G296800 Sobic001G031800--Sobic003G296800 Sobic004G260200 Sobic004G260200 Sobic001G031800--Sobic004G260200 Sobic001G031800--Sobic007G013900 Sobic002G309700 Sobic002G309700 Sobic001G031800--Sobic002G309700 Sobic001G031800--Sobic002G246800 Sobic001G031800--Sobic008G136800 Sobic007G184001 Sobic007G184001 Sobic001G031800--Sobic007G184001 Sobic009G215300 Sobic009G215300 Sobic007G013900--Sobic009G215300 Sobic007G013900--Sobic004G159000 Sobic007G013900--Sobic002G260200 Sobic006G013000 Sobic006G013000 Sobic007G013900--Sobic006G013000 Sobic007G013900--Sobic002G309700 Sobic007G013900--Sobic001G031800 Sobic007G013900--Sobic004G260200 Sobic002G395000 Sobic002G395000 Sobic007G013900--Sobic002G395000 Sobic007G013900--Sobic008G136800 Sobic003G074900--Sobic008G136800 Sobic003G074900--Sobic006G124300 Sobic003G074900--Sobic006G203900 Sobic002G387800 Sobic002G387800 Sobic003G074900--Sobic002G387800 Sobic003G074900--Sobic009G211900 Sobic003G016300 Sobic003G016300 Sobic003G074900--Sobic003G016300 Sobic001G219800 Sobic001G219800 Sobic003G074900--Sobic001G219800 Sobic003G074900--Sobic007G141100 Sobic003G074900--Sobic009G001900 Sobic009G001900--Sobic002G296200 Sobic009G001900--Sobic008G136800 Sobic004G066800 Sobic004G066800 Sobic009G001900--Sobic004G066800 Sobic009G001900--Sobic006G203900 Sobic003G322300 Sobic003G322300 Sobic009G001900--Sobic003G322300 Sobic009G001900--Sobic004G164000 Sobic006G231500 Sobic006G231500 Sobic009G001900--Sobic006G231500 Sobic009G001900--Sobic004G260200 Sobic009G001900--Sobic002G309700 Sobic002G246800--Sobic001G031800 Sobic003G335300 Sobic003G335300 Sobic002G246800--Sobic003G335300 Sobic001G181500 Sobic001G181500 Sobic002G246800--Sobic001G181500 Sobic009G209001 Sobic009G209001 Sobic002G246800--Sobic009G209001 Sobic010G231700 Sobic010G231700 Sobic002G246800--Sobic010G231700 Sobic002G246800--Sobic007G141100 Sobic010G031000 Sobic010G031000 Sobic002G246800--Sobic010G031000 Sobic002G246800--Sobic009G215300 Sobic002G246800--Sobic006G124300 Sobic003G131300 Sobic003G131300 Sobic004G164000--Sobic003G131300 Sobic007G019501 Sobic007G019501 Sobic004G164000--Sobic007G019501 Sobic004G164000--Sobic009G001900 Sobic004G164000--Sobic004G159000 Sobic002G090700 Sobic002G090700 Sobic004G164000--Sobic002G090700 Sobic001G392800 Sobic001G392800 Sobic004G164000--Sobic001G392800 Sobic001G309500 Sobic001G309500 Sobic004G164000--Sobic001G309500 Sobic004G164000--Sobic008G136800 Sobic008G025700 Sobic008G025700 Sobic004G164000--Sobic008G025700 Sobic002G260200--Sobic007G013900 Sobic002G260200--Sobic006G013000 Sobic002G260200--Sobic001G031800 Sobic002G260200--Sobic004G159000 Sobic002G260200--Sobic002G296200 Sobic002G262200 Sobic002G262200 Sobic002G260200--Sobic002G262200 Sobic003G305100 Sobic003G305100 Sobic002G260200--Sobic003G305100 Sobic002G260200--Sobic009G001900 Sobic002G260200--Sobic004G260200 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic004G159000--Sobic002G262200 Sobic004G030000 Sobic004G030000 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic003G152900 Sobic003G152900 Sobic004G159000--Sobic003G152900 Sobic004G159000--Sobic002G260200 Sobic010G007400 Sobic010G007400 Sobic004G159000--Sobic010G007400
Octagon: transcription factors


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