Gene annotation
Transcriptome id Sobic.009G077100.1
Synonym Sb09g006450, MED32
Functional annotation expressed protein
UniProt C5YUN2
Pfam -
Panther DB PTHR35989 PTHR35989:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11760 : -
RAP-DB (Rice) LOC_Os10g40070.1 : expressed protein
MaizeGDB (Corn) Zm00025a043139
Brachypodium KQJ96441
Barley HORVU1Hr1G032960.5 , HORVU1Hr1G032960.4 , HORVU1Hr1G032960.7 , HORVU1Hr1G032960.6 , HORVU1Hr1G032960.1 , HORVU1Hr1G032960.3 , HORVU1Hr1G032960.2 , HORVU1Hr1G032960.8
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
2 Sobic.009G024500 50S ribosomal protein L10, chloroplast precursor, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
3 Sobic.009G050000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
4 Sobic.007G141100 expressed protein K18179: cytochrome c oxidase assembly factor 6
5 Sobic.001G148700 signal peptidase complex subunit 1, putative, expressed K12946: signal peptidase complex subunit 1
6 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
7 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
8 Sobic.003G305100 expressed protein -
9 Sobic.001G100400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
10 Sobic.001G134200 expressed protein -
11 Sobic.003G296800 expressed protein -
12 Sobic.010G039000 expressed protein -
13 Sobic.002G368400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
14 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
15 Sobic.003G277000 expressed protein -
16 Sobic.009G001900 expressed protein -
17 Sobic.007G019501 - K13448: calcium-binding protein CML
18 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
19 Sobic.004G259600 slowmo homolog, putative, expressed -
20 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9


Gene co-expression network
sample Sobic009G077100 Sobic009G077100 Sobic001G031800 Sobic001G031800 Sobic009G077100--Sobic001G031800 Sobic009G024500 Sobic009G024500 Sobic009G077100--Sobic009G024500 Sobic009G050000 Sobic009G050000 Sobic009G077100--Sobic009G050000 Sobic007G141100 Sobic007G141100 Sobic009G077100--Sobic007G141100 Sobic001G148700 Sobic001G148700 Sobic009G077100--Sobic001G148700 Sobic002G246800 Sobic002G246800 Sobic009G077100--Sobic002G246800 Sobic001G067601 Sobic001G067601 Sobic009G077100--Sobic001G067601 Sobic003G305100 Sobic003G305100 Sobic009G077100--Sobic003G305100 Sobic001G100400 Sobic001G100400 Sobic009G077100--Sobic001G100400 Sobic001G134200 Sobic001G134200 Sobic001G031800--Sobic001G134200 Sobic002G263100 Sobic002G263100 Sobic001G031800--Sobic002G263100 Sobic003G296800 Sobic003G296800 Sobic001G031800--Sobic003G296800 Sobic004G260200 Sobic004G260200 Sobic001G031800--Sobic004G260200 Sobic007G013900 Sobic007G013900 Sobic001G031800--Sobic007G013900 Sobic002G309700 Sobic002G309700 Sobic001G031800--Sobic002G309700 Sobic001G031800--Sobic002G246800 Sobic008G136800 Sobic008G136800 Sobic001G031800--Sobic008G136800 Sobic007G184001 Sobic007G184001 Sobic001G031800--Sobic007G184001 Sobic009G024500--Sobic002G263100 Sobic009G024500--Sobic001G031800 Sobic009G024500--Sobic003G296800 Sobic009G024500--Sobic003G305100 Sobic009G024500--Sobic004G260200 Sobic009G024500--Sobic009G077100 Sobic009G024500--Sobic002G309700 Sobic001G047800 Sobic001G047800 Sobic009G024500--Sobic001G047800 Sobic004G060500 Sobic004G060500 Sobic009G024500--Sobic004G060500 Sobic009G050000--Sobic009G077100 Sobic010G039000 Sobic010G039000 Sobic009G050000--Sobic010G039000 Sobic003G116600 Sobic003G116600 Sobic009G050000--Sobic003G116600 Sobic004G159000 Sobic004G159000 Sobic009G050000--Sobic004G159000 Sobic003G167000 Sobic003G167000 Sobic009G050000--Sobic003G167000 Sobic002G368400 Sobic002G368400 Sobic009G050000--Sobic002G368400 Sobic005G019100 Sobic005G019100 Sobic009G050000--Sobic005G019100 Sobic010G178800 Sobic010G178800 Sobic009G050000--Sobic010G178800 Sobic009G050000--Sobic007G141100 Sobic007G141100--Sobic008G136800 Sobic007G141100--Sobic001G031800 Sobic007G141100--Sobic007G013900 Sobic003G074900 Sobic003G074900 Sobic007G141100--Sobic003G074900 Sobic009G001900 Sobic009G001900 Sobic007G141100--Sobic009G001900 Sobic007G141100--Sobic002G246800 Sobic004G164000 Sobic004G164000 Sobic007G141100--Sobic004G164000 Sobic002G260200 Sobic002G260200 Sobic007G141100--Sobic002G260200 Sobic007G141100--Sobic004G159000 Sobic004G063500 Sobic004G063500 Sobic001G148700--Sobic004G063500 Sobic001G441000 Sobic001G441000 Sobic001G148700--Sobic001G441000 Sobic010G262300 Sobic010G262300 Sobic001G148700--Sobic010G262300 Sobic001G148700--Sobic001G134200 Sobic009G149800 Sobic009G149800 Sobic001G148700--Sobic009G149800 Sobic001G148700--Sobic001G067601 Sobic004G259600 Sobic004G259600 Sobic001G148700--Sobic004G259600 Sobic007G161700 Sobic007G161700 Sobic001G148700--Sobic007G161700 Sobic001G148700--Sobic001G031800 Sobic002G246800--Sobic001G031800 Sobic003G335300 Sobic003G335300 Sobic002G246800--Sobic003G335300 Sobic001G181500 Sobic001G181500 Sobic002G246800--Sobic001G181500 Sobic009G209001 Sobic009G209001 Sobic002G246800--Sobic009G209001 Sobic010G231700 Sobic010G231700 Sobic002G246800--Sobic010G231700 Sobic002G246800--Sobic007G141100 Sobic010G031000 Sobic010G031000 Sobic002G246800--Sobic010G031000 Sobic009G215300 Sobic009G215300 Sobic002G246800--Sobic009G215300 Sobic006G124300 Sobic006G124300 Sobic002G246800--Sobic006G124300 Sobic001G019900 Sobic001G019900 Sobic001G067601--Sobic001G019900 Sobic009G023200 Sobic009G023200 Sobic001G067601--Sobic009G023200 Sobic002G046100 Sobic002G046100 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic001G067601--Sobic003G063200 Sobic001G037000 Sobic001G037000 Sobic001G067601--Sobic001G037000 Sobic005G228000 Sobic005G228000 Sobic001G067601--Sobic005G228000 Sobic003G181500 Sobic003G181500 Sobic001G067601--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic001G067601--Sobic003G162700 Sobic003G277000 Sobic003G277000 Sobic003G305100--Sobic003G277000 Sobic006G231500 Sobic006G231500 Sobic003G305100--Sobic006G231500 Sobic007G091000 Sobic007G091000 Sobic003G305100--Sobic007G091000 Sobic009G062000 Sobic009G062000 Sobic003G305100--Sobic009G062000 Sobic002G296200 Sobic002G296200 Sobic003G305100--Sobic002G296200 Sobic001G095632 Sobic001G095632 Sobic003G305100--Sobic001G095632 Sobic003G305100--Sobic002G260200 Sobic003G305100--Sobic009G024500 Sobic001G538600 Sobic001G538600 Sobic003G305100--Sobic001G538600 Sobic001G100400--Sobic003G296800 Sobic001G100400--Sobic001G031800 Sobic002G246200 Sobic002G246200 Sobic001G100400--Sobic002G246200 Sobic002G136700 Sobic002G136700 Sobic001G100400--Sobic002G136700 Sobic001G110000 Sobic001G110000 Sobic001G100400--Sobic001G110000 Sobic006G262300 Sobic006G262300 Sobic001G100400--Sobic006G262300 Sobic001G100400--Sobic002G263100 Sobic002G135200 Sobic002G135200 Sobic001G100400--Sobic002G135200 Sobic001G077000 Sobic001G077000 Sobic001G100400--Sobic001G077000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.