Gene annotation
Transcriptome id Sobic.001G100400.2,Sobic.001G100400.3,Sobic.001G100400.1
Synonym Sb01g008970
Functional annotation ribosomal protein L7/L12 C-terminal domain containing protein, expressed
UniProt C5WLW3
Pfam PF16320 PF00542
Panther DB PTHR24089 PTHR24089:SF321
NCBI CDD KOG1715; Mitochondrial/chloroplast ribosomal protein L12
KEGG Orthology K02935; RP-L7, MRPL12, large subunit ribosomal protein L7/L12
Gene Ontology GO:0006412; translation GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G70190 : Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
RAP-DB (Rice) LOC_Os03g52400.1 : ribosomal protein L7/L12 C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016867
Brachypodium KQK13351
Barley -
Wheat TraesCS4A02G250000
Populus -


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cDNA sequences
Sobic.001G100400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296800 expressed protein -
2 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
3 Sobic.002G246200 expressed protein -
4 Sobic.002G136700 expressed protein -
5 Sobic.001G110000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
6 Sobic.006G262300 expressed protein -
7 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
8 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
9 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
10 Sobic.009G024500 50S ribosomal protein L10, chloroplast precursor, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
11 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
12 Sobic.006G261900 expressed protein -
13 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
14 Sobic.009G077100 expressed protein -
15 Sobic.007G177200 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
16 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
17 Sobic.002G296200 expressed protein -
18 Sobic.004G333500 proteasome maturation factor UMP1 family protein, expressed K11599: POMP, proteasome maturation protein
19 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
20 Sobic.010G031000 expressed protein -


Gene co-expression network
sample Sobic001G100400 Sobic001G100400 Sobic003G296800 Sobic003G296800 Sobic001G100400--Sobic003G296800 Sobic001G031800 Sobic001G031800 Sobic001G100400--Sobic001G031800 Sobic002G246200 Sobic002G246200 Sobic001G100400--Sobic002G246200 Sobic002G136700 Sobic002G136700 Sobic001G100400--Sobic002G136700 Sobic001G110000 Sobic001G110000 Sobic001G100400--Sobic001G110000 Sobic006G262300 Sobic006G262300 Sobic001G100400--Sobic006G262300 Sobic002G263100 Sobic002G263100 Sobic001G100400--Sobic002G263100 Sobic002G135200 Sobic002G135200 Sobic001G100400--Sobic002G135200 Sobic001G077000 Sobic001G077000 Sobic001G100400--Sobic001G077000 Sobic001G047800 Sobic001G047800 Sobic003G296800--Sobic001G047800 Sobic003G215700 Sobic003G215700 Sobic003G296800--Sobic003G215700 Sobic003G296800--Sobic002G263100 Sobic002G296200 Sobic002G296200 Sobic003G296800--Sobic002G296200 Sobic004G183200 Sobic004G183200 Sobic003G296800--Sobic004G183200 Sobic001G404800 Sobic001G404800 Sobic003G296800--Sobic001G404800 Sobic003G296800--Sobic006G262300 Sobic002G309700 Sobic002G309700 Sobic003G296800--Sobic002G309700 Sobic004G060500 Sobic004G060500 Sobic003G296800--Sobic004G060500 Sobic001G134200 Sobic001G134200 Sobic001G031800--Sobic001G134200 Sobic001G031800--Sobic002G263100 Sobic001G031800--Sobic003G296800 Sobic004G260200 Sobic004G260200 Sobic001G031800--Sobic004G260200 Sobic007G013900 Sobic007G013900 Sobic001G031800--Sobic007G013900 Sobic001G031800--Sobic002G309700 Sobic002G246800 Sobic002G246800 Sobic001G031800--Sobic002G246800 Sobic008G136800 Sobic008G136800 Sobic001G031800--Sobic008G136800 Sobic007G184001 Sobic007G184001 Sobic001G031800--Sobic007G184001 Sobic007G211500 Sobic007G211500 Sobic002G246200--Sobic007G211500 Sobic002G246200--Sobic001G110000 Sobic002G078300 Sobic002G078300 Sobic002G246200--Sobic002G078300 Sobic002G246200--Sobic004G260200 Sobic002G246200--Sobic002G263100 Sobic001G286200 Sobic001G286200 Sobic002G246200--Sobic001G286200 Sobic002G246200--Sobic001G404800 Sobic002G246200--Sobic001G047800 Sobic009G206700 Sobic009G206700 Sobic002G246200--Sobic009G206700 Sobic004G228700 Sobic004G228700 Sobic002G136700--Sobic004G228700 Sobic002G136700--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic002G136700--Sobic002G418400 Sobic010G028200 Sobic010G028200 Sobic002G136700--Sobic010G028200 Sobic003G209000 Sobic003G209000 Sobic002G136700--Sobic003G209000 Sobic003G218400 Sobic003G218400 Sobic002G136700--Sobic003G218400 Sobic002G136700--Sobic001G047800 Sobic001G533500 Sobic001G533500 Sobic002G136700--Sobic001G533500 Sobic002G136700--Sobic002G135200 Sobic002G329900 Sobic002G329900 Sobic001G110000--Sobic002G329900 Sobic004G055100 Sobic004G055100 Sobic001G110000--Sobic004G055100 Sobic001G110000--Sobic001G404800 Sobic001G110000--Sobic002G246200 Sobic003G160700 Sobic003G160700 Sobic001G110000--Sobic003G160700 Sobic001G110000--Sobic003G215700 Sobic001G110000--Sobic003G209000 Sobic001G110000--Sobic002G418400 Sobic001G110000--Sobic001G047800 Sobic006G261900 Sobic006G261900 Sobic006G262300--Sobic006G261900 Sobic002G375100 Sobic002G375100 Sobic006G262300--Sobic002G375100 Sobic001G432000 Sobic001G432000 Sobic006G262300--Sobic001G432000 Sobic010G251600 Sobic010G251600 Sobic006G262300--Sobic010G251600 Sobic006G262300--Sobic003G296800 Sobic002G081600 Sobic002G081600 Sobic006G262300--Sobic002G081600 Sobic006G116700 Sobic006G116700 Sobic006G262300--Sobic006G116700 Sobic003G436700 Sobic003G436700 Sobic006G262300--Sobic003G436700 Sobic006G262300--Sobic001G533500 Sobic007G134900 Sobic007G134900 Sobic002G263100--Sobic007G134900 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic001G519000 Sobic001G519000 Sobic002G263100--Sobic001G519000 Sobic002G263100--Sobic004G260200 Sobic002G263100--Sobic003G296800 Sobic002G263100--Sobic003G215700 Sobic002G263100--Sobic001G286200 Sobic002G263100--Sobic001G404800 Sobic004G198400 Sobic004G198400 Sobic002G135200--Sobic004G198400 Sobic002G374900 Sobic002G374900 Sobic002G135200--Sobic002G374900 Sobic002G379500 Sobic002G379500 Sobic002G135200--Sobic002G379500 Sobic001G011200 Sobic001G011200 Sobic002G135200--Sobic001G011200 Sobic001G175300 Sobic001G175300 Sobic002G135200--Sobic001G175300 Sobic007G018300 Sobic007G018300 Sobic002G135200--Sobic007G018300 Sobic009G223300 Sobic009G223300 Sobic002G135200--Sobic009G223300 Sobic001G091801 Sobic001G091801 Sobic002G135200--Sobic001G091801 Sobic002G135200--Sobic001G533500 Sobic003G072300 Sobic003G072300 Sobic001G077000--Sobic003G072300 Sobic001G077000--Sobic002G418400 Sobic003G155400 Sobic003G155400 Sobic001G077000--Sobic003G155400 Sobic001G077000--Sobic003G209000 Sobic001G077000--Sobic002G296200 Sobic006G083500 Sobic006G083500 Sobic001G077000--Sobic006G083500 Sobic001G077000--Sobic003G215700 Sobic001G077000--Sobic004G060500 Sobic001G077000--Sobic003G296800
Octagon: transcription factors


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