Gene annotation
Transcriptome id Sobic.001G110000.1
Synonym HTA3, H2AXB, G-H2AX, GAMMA-H2AX, Sb01g009820
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5WMX3
Pfam PF00125 PF16211
Panther DB PTHR23430 PTHR23430:SF62
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G54690 : gamma histone variant H2AX
RAP-DB (Rice) LOC_Os12g34510.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028432 , Zm00025a052735 , Zm00025a007941 , Zm00025a048317
Brachypodium KQJ86512 , KQK07730 , KQK13476 , KQJ89933 , KQK11794 , KQK05873
Barley HORVU1Hr1G071950.1 , HORVU3Hr1G116550.3 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU7Hr1G096660.2 , HORVU7Hr1G096660.1 , HORVU0Hr1G016940.1 , HORVU0Hr1G016940.2 , HORVU0Hr1G016940.3 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU6Hr1G092390.1 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G117230.2 , HORVU5Hr1G026650.6 , HORVU5Hr1G026650.7 , HORVU5Hr1G026650.4 , HORVU5Hr1G026650.5 , HORVU5Hr1G026650.2 , HORVU5Hr1G026650.3 , HORVU5Hr1G026650.1 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU7Hr1G112470.2 , HORVU7Hr1G112470.3 , HORVU7Hr1G117230.1 , HORVU6Hr1G029220.3 , HORVU6Hr1G029220.2 , HORVU6Hr1G003750.1 , HORVU7Hr1G117230.3 , HORVU6Hr1G003750.2 , HORVU6Hr1G092280.2 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU5Hr1G110680.1 , HORVU6Hr1G006090.1 , HORVU5Hr1G090670.1 , HORVU5Hr1G090670.2 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU6Hr1G092280.1 , HORVU4Hr1G058810.1 , HORVU4Hr1G090910.2 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU1Hr1G071960.2 , HORVU6Hr1G011490.2 , HORVU4Hr1G008800.2 , HORVU4Hr1G008800.3 , HORVU4Hr1G008800.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS6B02G048700 , TraesCS6D02G062300 , TraesCS1A02G038200 , TraesCS5A02G098300 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6B02G082100 , TraesCS6D02G062800 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS6A02G062600 , TraesCS6D02G040700 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS5B02G103600 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS4D02G053100 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS6A02G034900 , TraesCS7D02G488500 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS5D02G110600 , TraesCS3A02G534100 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6D02G040300 , TraesCS6B02G048600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS6A02G061700 , TraesCS7D02G488600 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS6D02G039900 , TraesCS3B02G611300 , TraesCS7B02G408400 , TraesCS6B02G100100 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
2 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
3 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
4 Sobic.002G246200 expressed protein -
5 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
6 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
7 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
8 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
9 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
10 Sobic.001G502900 nicotiana lesion-inducing like, putative, expressed -
11 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
12 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
13 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
14 Sobic.006G083500 SLL1 protein, putative, expressed -
15 Sobic.002G136700 expressed protein -
16 Sobic.004G228700 expressed protein -
17 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
18 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
19 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
20 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -


Gene co-expression network
sample Sobic001G110000 Sobic001G110000 Sobic002G329900 Sobic002G329900 Sobic001G110000--Sobic002G329900 Sobic004G055100 Sobic004G055100 Sobic001G110000--Sobic004G055100 Sobic001G404800 Sobic001G404800 Sobic001G110000--Sobic001G404800 Sobic002G246200 Sobic002G246200 Sobic001G110000--Sobic002G246200 Sobic003G160700 Sobic003G160700 Sobic001G110000--Sobic003G160700 Sobic003G215700 Sobic003G215700 Sobic001G110000--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic001G110000--Sobic003G209000 Sobic002G418400 Sobic002G418400 Sobic001G110000--Sobic002G418400 Sobic001G047800 Sobic001G047800 Sobic001G110000--Sobic001G047800 Sobic002G329900--Sobic001G047800 Sobic002G329900--Sobic001G110000 Sobic002G329900--Sobic001G404800 Sobic002G263100 Sobic002G263100 Sobic002G329900--Sobic002G263100 Sobic002G329900--Sobic003G215700 Sobic001G197000 Sobic001G197000 Sobic002G329900--Sobic001G197000 Sobic001G519000 Sobic001G519000 Sobic002G329900--Sobic001G519000 Sobic008G006300 Sobic008G006300 Sobic002G329900--Sobic008G006300 Sobic002G348100 Sobic002G348100 Sobic002G329900--Sobic002G348100 Sobic010G070500 Sobic010G070500 Sobic004G055100--Sobic010G070500 Sobic003G078200 Sobic003G078200 Sobic004G055100--Sobic003G078200 Sobic010G251600 Sobic010G251600 Sobic004G055100--Sobic010G251600 Sobic009G054800 Sobic009G054800 Sobic004G055100--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic004G055100--Sobic010G206200 Sobic002G414700 Sobic002G414700 Sobic004G055100--Sobic002G414700 Sobic003G436700 Sobic003G436700 Sobic004G055100--Sobic003G436700 Sobic001G226500 Sobic001G226500 Sobic004G055100--Sobic001G226500 Sobic001G175300 Sobic001G175300 Sobic004G055100--Sobic001G175300 Sobic001G404800--Sobic003G209000 Sobic004G259200 Sobic004G259200 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic002G356400 Sobic002G356400 Sobic001G404800--Sobic002G356400 Sobic002G309700 Sobic002G309700 Sobic001G404800--Sobic002G309700 Sobic006G083500 Sobic006G083500 Sobic001G404800--Sobic006G083500 Sobic004G260200 Sobic004G260200 Sobic001G404800--Sobic004G260200 Sobic007G211500 Sobic007G211500 Sobic002G246200--Sobic007G211500 Sobic002G246200--Sobic001G110000 Sobic002G078300 Sobic002G078300 Sobic002G246200--Sobic002G078300 Sobic002G246200--Sobic004G260200 Sobic002G246200--Sobic002G263100 Sobic001G286200 Sobic001G286200 Sobic002G246200--Sobic001G286200 Sobic002G246200--Sobic001G404800 Sobic002G246200--Sobic001G047800 Sobic009G206700 Sobic009G206700 Sobic002G246200--Sobic009G206700 Sobic005G113300 Sobic005G113300 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G125650 Sobic003G125650 Sobic003G160700--Sobic003G125650 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic004G220000 Sobic004G220000 Sobic003G160700--Sobic004G220000 Sobic009G188000 Sobic009G188000 Sobic003G160700--Sobic009G188000 Sobic003G160700--Sobic003G436700 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic004G211833 Sobic004G211833 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic010G012500 Sobic010G012500 Sobic003G215700--Sobic010G012500 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic003G209000--Sobic006G083500 Sobic003G209000--Sobic003G215700 Sobic007G051000 Sobic007G051000 Sobic003G209000--Sobic007G051000 Sobic009G119900 Sobic009G119900 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic002G418400--Sobic004G211833 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic001G047800--Sobic002G418400 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic001G047800--Sobic002G263100 Sobic001G047800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G047800--Sobic007G134900 Sobic001G047800--Sobic001G519000
Octagon: transcription factors


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