Gene annotation
Transcriptome id Sobic.002G329900.1
Synonym Sb02g035640, HTA2
Functional annotation core histone H2A/H2B/H3/H4, putative, expressed
UniProt C5XAT8
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G27230 : histone H2A 2
RAP-DB (Rice) LOC_Os07g36130.1 : core histone H2A/H2B/H3/H4, putative, expressed
MaizeGDB (Corn) Zm00025a014436 , Zm00025a048317 , Zm00025a048318 , Zm00025a014855
Brachypodium PNT74968 , KQK22303 , KQJ86512 , KQK07730 , KQK15863 , KQK15862 , KQJ89933 , KQK11794 , KQK05873
Barley HORVU1Hr1G071950.1 , HORVU3Hr1G116550.3 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU7Hr1G096660.2 , HORVU7Hr1G096660.1 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU4Hr1G070250.1 , HORVU4Hr1G070250.3 , HORVU4Hr1G070250.4 , HORVU4Hr1G070250.5 , HORVU7Hr1G117230.1 , HORVU7Hr1G100100.2 , HORVU7Hr1G117230.3 , HORVU7Hr1G117230.2 , HORVU5Hr1G026650.6 , HORVU5Hr1G026650.7 , HORVU5Hr1G026650.4 , HORVU5Hr1G026650.5 , HORVU5Hr1G026650.2 , HORVU5Hr1G026650.3 , HORVU5Hr1G026650.1 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU7Hr1G112470.2 , HORVU6Hr1G029220.2 , HORVU7Hr1G100100.3 , HORVU6Hr1G029220.3 , HORVU7Hr1G112470.3 , HORVU7Hr1G100100.1 , HORVU4Hr1G090910.2 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU5Hr1G110680.1 , HORVU6Hr1G006090.1 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU4Hr1G058810.1 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU1Hr1G071960.2 , HORVU6Hr1G011490.2 , HORVU2Hr1G043840.1 , HORVU4Hr1G008800.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS6B02G048700 , TraesCS1A02G038200 , TraesCS2D02G220400 , TraesCS5A02G098300 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6A02G061700 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS3A02G534300 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS1B02G357400 , TraesCS6A02G062600 , TraesCS6D02G040700 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS2B02G239700 , TraesCS2A02G214700 , TraesCS6A02G034900 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS5D02G110600 , TraesCS3A02G534100 , TraesCS2A02G214600 , TraesCS5B02G103600 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6D02G039900 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6B02G048600 , TraesCS2B02G239600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS2D02G220500 , TraesCS6B02G082100 , TraesCS7D02G488600 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS3D02G539700 , TraesCS7B02G408400 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


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cDNA sequences
Sobic.002G329900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
2 Sobic.001G110000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
3 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
4 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
5 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
6 Sobic.001G197000 dehydration response related protein, putative, expressed -
7 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
8 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
9 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
10 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
11 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
12 Sobic.003G296800 expressed protein -
13 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
14 Sobic.007G184001 - K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
15 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
16 Sobic.003G289601 - -
17 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
18 Sobic.007G134900 expressed protein -
19 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
20 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae


Gene co-expression network
sample Sobic002G329900 Sobic002G329900 Sobic001G047800 Sobic001G047800 Sobic002G329900--Sobic001G047800 Sobic001G110000 Sobic001G110000 Sobic002G329900--Sobic001G110000 Sobic001G404800 Sobic001G404800 Sobic002G329900--Sobic001G404800 Sobic002G263100 Sobic002G263100 Sobic002G329900--Sobic002G263100 Sobic003G215700 Sobic003G215700 Sobic002G329900--Sobic003G215700 Sobic001G197000 Sobic001G197000 Sobic002G329900--Sobic001G197000 Sobic001G519000 Sobic001G519000 Sobic002G329900--Sobic001G519000 Sobic008G006300 Sobic008G006300 Sobic002G329900--Sobic008G006300 Sobic002G348100 Sobic002G348100 Sobic002G329900--Sobic002G348100 Sobic002G309700 Sobic002G309700 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic001G047800--Sobic002G418400 Sobic004G260200 Sobic004G260200 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic001G047800--Sobic002G263100 Sobic004G060500 Sobic004G060500 Sobic001G047800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G047800--Sobic007G134900 Sobic001G047800--Sobic001G519000 Sobic001G110000--Sobic002G329900 Sobic004G055100 Sobic004G055100 Sobic001G110000--Sobic004G055100 Sobic001G110000--Sobic001G404800 Sobic002G246200 Sobic002G246200 Sobic001G110000--Sobic002G246200 Sobic003G160700 Sobic003G160700 Sobic001G110000--Sobic003G160700 Sobic001G110000--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic001G110000--Sobic003G209000 Sobic001G110000--Sobic002G418400 Sobic001G110000--Sobic001G047800 Sobic001G404800--Sobic003G209000 Sobic004G259200 Sobic004G259200 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic002G356400 Sobic002G356400 Sobic001G404800--Sobic002G356400 Sobic001G404800--Sobic002G309700 Sobic006G083500 Sobic006G083500 Sobic001G404800--Sobic006G083500 Sobic001G404800--Sobic004G260200 Sobic002G263100--Sobic007G134900 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic002G263100--Sobic001G519000 Sobic002G263100--Sobic004G260200 Sobic003G296800 Sobic003G296800 Sobic002G263100--Sobic003G296800 Sobic002G263100--Sobic003G215700 Sobic001G286200 Sobic001G286200 Sobic002G263100--Sobic001G286200 Sobic002G263100--Sobic001G404800 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic004G211833 Sobic004G211833 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic010G012500 Sobic010G012500 Sobic003G215700--Sobic010G012500 Sobic004G159400 Sobic004G159400 Sobic001G197000--Sobic004G159400 Sobic001G077000 Sobic001G077000 Sobic001G197000--Sobic001G077000 Sobic001G197000--Sobic002G329900 Sobic001G197000--Sobic003G215700 Sobic001G197000--Sobic001G047800 Sobic001G533400 Sobic001G533400 Sobic001G197000--Sobic001G533400 Sobic001G197000--Sobic003G209000 Sobic001G197000--Sobic002G418400 Sobic010G031000 Sobic010G031000 Sobic001G197000--Sobic010G031000 Sobic001G519000--Sobic007G134900 Sobic001G519000--Sobic004G060500 Sobic001G519000--Sobic003G215700 Sobic001G519000--Sobic001G047800 Sobic001G519000--Sobic002G263100 Sobic010G264300 Sobic010G264300 Sobic001G519000--Sobic010G264300 Sobic001G519000--Sobic002G309700 Sobic002G296200 Sobic002G296200 Sobic001G519000--Sobic002G296200 Sobic009G173500 Sobic009G173500 Sobic001G519000--Sobic009G173500 Sobic008G006300--Sobic001G047800 Sobic008G006300--Sobic002G418400 Sobic008G006300--Sobic004G159400 Sobic008G006300--Sobic002G329900 Sobic003G218400 Sobic003G218400 Sobic008G006300--Sobic003G218400 Sobic008G006300--Sobic001G404800 Sobic004G232500 Sobic004G232500 Sobic008G006300--Sobic004G232500 Sobic002G227300 Sobic002G227300 Sobic008G006300--Sobic002G227300 Sobic004G055700 Sobic004G055700 Sobic008G006300--Sobic004G055700 Sobic002G372400 Sobic002G372400 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic003G078200 Sobic003G078200 Sobic002G348100--Sobic003G078200 Sobic001G055600 Sobic001G055600 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic006G137800 Sobic006G137800 Sobic002G348100--Sobic006G137800 Sobic009G054800 Sobic009G054800 Sobic002G348100--Sobic009G054800 Sobic004G198400 Sobic004G198400 Sobic002G348100--Sobic004G198400 Sobic002G348100--Sobic004G055100
Octagon: transcription factors


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