Gene annotation
Transcriptome id Sobic.007G184001.1
Synonym -
Functional annotation -
UniProt A0A1Z5RAJ8
Pfam PF00179
Panther DB PTHR24067:SF44 PTHR24067
NCBI CDD KOG0421; Ubiquitin-protein ligase
KEGG Orthology K06688; UBE2C, ubiquitin-conjugating enzyme E2 C
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20060 : ubiquitin-conjugating enzyme19
RAP-DB (Rice) LOC_Os01g16650.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a024086 , Zm00025a035239
Brachypodium KQK03855
Barley HORVU3Hr1G038430.3 , HORVU3Hr1G038430.2 , HORVU3Hr1G038430.1 , HORVU3Hr1G038430.4
Wheat TraesCS3B02G216000 , TraesCS3B02G216000 , TraesCS3A02G186500 , TraesCS3D02G190400 , TraesCS3D02G190400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289601 - -
2 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
3 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
4 Sobic.009G209001 - -
5 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
6 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
7 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
8 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
9 Sobic.003G296800 expressed protein -
10 Sobic.007G134900 expressed protein -
11 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
12 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
13 Sobic.001G197000 dehydration response related protein, putative, expressed -
14 Sobic.001G134200 expressed protein -
15 Sobic.009G024500 50S ribosomal protein L10, chloroplast precursor, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
16 Sobic.004G183200 expressed protein -
17 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
18 Sobic.009G211900 expressed protein -
19 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
20 Sobic.010G089500 annexin, putative, expressed -


Gene co-expression network
sample Sobic007G184001 Sobic007G184001 Sobic003G289601 Sobic003G289601 Sobic007G184001--Sobic003G289601 Sobic001G031800 Sobic001G031800 Sobic007G184001--Sobic001G031800 Sobic002G329900 Sobic002G329900 Sobic007G184001--Sobic002G329900 Sobic009G209001 Sobic009G209001 Sobic007G184001--Sobic009G209001 Sobic001G047800 Sobic001G047800 Sobic007G184001--Sobic001G047800 Sobic002G263100 Sobic002G263100 Sobic007G184001--Sobic002G263100 Sobic004G260200 Sobic004G260200 Sobic007G184001--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic007G184001--Sobic002G309700 Sobic003G296800 Sobic003G296800 Sobic007G184001--Sobic003G296800 Sobic006G261900 Sobic006G261900 Sobic003G289601--Sobic006G261900 Sobic003G289601--Sobic007G184001 Sobic003G289601--Sobic001G047800 Sobic006G262300 Sobic006G262300 Sobic003G289601--Sobic006G262300 Sobic003G289601--Sobic003G296800 Sobic009G173500 Sobic009G173500 Sobic003G289601--Sobic009G173500 Sobic003G289601--Sobic002G329900 Sobic009G223300 Sobic009G223300 Sobic003G289601--Sobic009G223300 Sobic003G289601--Sobic002G309700 Sobic001G134200 Sobic001G134200 Sobic001G031800--Sobic001G134200 Sobic001G031800--Sobic002G263100 Sobic001G031800--Sobic003G296800 Sobic001G031800--Sobic004G260200 Sobic007G013900 Sobic007G013900 Sobic001G031800--Sobic007G013900 Sobic001G031800--Sobic002G309700 Sobic002G246800 Sobic002G246800 Sobic001G031800--Sobic002G246800 Sobic008G136800 Sobic008G136800 Sobic001G031800--Sobic008G136800 Sobic001G031800--Sobic007G184001 Sobic002G329900--Sobic001G047800 Sobic001G110000 Sobic001G110000 Sobic002G329900--Sobic001G110000 Sobic001G404800 Sobic001G404800 Sobic002G329900--Sobic001G404800 Sobic002G329900--Sobic002G263100 Sobic003G215700 Sobic003G215700 Sobic002G329900--Sobic003G215700 Sobic001G197000 Sobic001G197000 Sobic002G329900--Sobic001G197000 Sobic001G519000 Sobic001G519000 Sobic002G329900--Sobic001G519000 Sobic008G006300 Sobic008G006300 Sobic002G329900--Sobic008G006300 Sobic002G348100 Sobic002G348100 Sobic002G329900--Sobic002G348100 Sobic009G209001--Sobic007G184001 Sobic009G209001--Sobic002G246800 Sobic009G209001--Sobic001G031800 Sobic001G135200 Sobic001G135200 Sobic009G209001--Sobic001G135200 Sobic009G209001--Sobic001G134200 Sobic003G044700 Sobic003G044700 Sobic009G209001--Sobic003G044700 Sobic001G084166 Sobic001G084166 Sobic009G209001--Sobic001G084166 Sobic009G209001--Sobic003G289601 Sobic004G183200 Sobic004G183200 Sobic009G209001--Sobic004G183200 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic001G047800--Sobic002G418400 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic001G047800--Sobic002G263100 Sobic004G060500 Sobic004G060500 Sobic001G047800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G047800--Sobic007G134900 Sobic001G047800--Sobic001G519000 Sobic002G263100--Sobic007G134900 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic002G263100--Sobic001G519000 Sobic002G263100--Sobic004G260200 Sobic002G263100--Sobic003G296800 Sobic002G263100--Sobic003G215700 Sobic001G286200 Sobic001G286200 Sobic002G263100--Sobic001G286200 Sobic002G263100--Sobic001G404800 Sobic004G260200--Sobic002G309700 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic002G395000 Sobic002G395000 Sobic004G260200--Sobic002G395000 Sobic002G356400 Sobic002G356400 Sobic004G260200--Sobic002G356400 Sobic004G260200--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic004G260200--Sobic009G215300 Sobic004G260200--Sobic002G263100 Sobic001G074700 Sobic001G074700 Sobic004G260200--Sobic001G074700 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic002G309700--Sobic003G215700 Sobic003G296800--Sobic001G047800 Sobic003G296800--Sobic003G215700 Sobic003G296800--Sobic002G263100 Sobic003G296800--Sobic002G296200 Sobic003G296800--Sobic004G183200 Sobic003G296800--Sobic001G404800 Sobic003G296800--Sobic006G262300 Sobic003G296800--Sobic002G309700 Sobic003G296800--Sobic004G060500
Octagon: transcription factors


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