Gene annotation
Transcriptome id Sobic.004G183200.1
Synonym Sb04g023240
Functional annotation expressed protein
UniProt C5XUZ9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14450 : NADH dehydrogenase (ubiquinone)s
RAP-DB (Rice) LOC_Os02g35610.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ99939
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G183200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296800 expressed protein -
2 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
3 Sobic.010G059300 cytochrome b-c1 complex subunit 8, putative, expressed -
4 Sobic.007G211500 expressed protein -
5 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
6 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
7 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
8 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
9 Sobic.004G060500 fiber protein Fb15, putative, expressed -
10 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
11 Sobic.003G286200 expressed protein -
12 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
13 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
14 Sobic.007G134900 expressed protein -
15 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
16 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
17 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
18 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
19 Sobic.002G308300 expressed protein -
20 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae


Gene co-expression network
sample Sobic004G183200 Sobic004G183200 Sobic003G296800 Sobic003G296800 Sobic004G183200--Sobic003G296800 Sobic001G519000 Sobic001G519000 Sobic004G183200--Sobic001G519000 Sobic010G059300 Sobic010G059300 Sobic004G183200--Sobic010G059300 Sobic007G211500 Sobic007G211500 Sobic004G183200--Sobic007G211500 Sobic002G263100 Sobic002G263100 Sobic004G183200--Sobic002G263100 Sobic001G047800 Sobic001G047800 Sobic004G183200--Sobic001G047800 Sobic007G161700 Sobic007G161700 Sobic004G183200--Sobic007G161700 Sobic001G286200 Sobic001G286200 Sobic004G183200--Sobic001G286200 Sobic004G060500 Sobic004G060500 Sobic004G183200--Sobic004G060500 Sobic003G296800--Sobic001G047800 Sobic003G215700 Sobic003G215700 Sobic003G296800--Sobic003G215700 Sobic003G296800--Sobic002G263100 Sobic002G296200 Sobic002G296200 Sobic003G296800--Sobic002G296200 Sobic003G296800--Sobic004G183200 Sobic001G404800 Sobic001G404800 Sobic003G296800--Sobic001G404800 Sobic006G262300 Sobic006G262300 Sobic003G296800--Sobic006G262300 Sobic002G309700 Sobic002G309700 Sobic003G296800--Sobic002G309700 Sobic003G296800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G519000--Sobic007G134900 Sobic001G519000--Sobic004G060500 Sobic001G519000--Sobic003G215700 Sobic001G519000--Sobic001G047800 Sobic001G519000--Sobic002G263100 Sobic010G264300 Sobic010G264300 Sobic001G519000--Sobic010G264300 Sobic001G519000--Sobic002G309700 Sobic001G519000--Sobic002G296200 Sobic009G173500 Sobic009G173500 Sobic001G519000--Sobic009G173500 Sobic010G059300--Sobic004G060500 Sobic010G059300--Sobic001G519000 Sobic010G059300--Sobic004G183200 Sobic010G059300--Sobic001G047800 Sobic010G059300--Sobic010G264300 Sobic003G218400 Sobic003G218400 Sobic010G059300--Sobic003G218400 Sobic001G095632 Sobic001G095632 Sobic010G059300--Sobic001G095632 Sobic002G418400 Sobic002G418400 Sobic010G059300--Sobic002G418400 Sobic010G059300--Sobic003G296800 Sobic007G211500--Sobic001G286200 Sobic002G078300 Sobic002G078300 Sobic007G211500--Sobic002G078300 Sobic002G246200 Sobic002G246200 Sobic007G211500--Sobic002G246200 Sobic007G211500--Sobic002G263100 Sobic008G051800 Sobic008G051800 Sobic007G211500--Sobic008G051800 Sobic007G211500--Sobic004G183200 Sobic007G211500--Sobic001G519000 Sobic007G211500--Sobic010G264300 Sobic002G308300 Sobic002G308300 Sobic007G211500--Sobic002G308300 Sobic002G263100--Sobic007G134900 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic002G263100--Sobic001G519000 Sobic004G260200 Sobic004G260200 Sobic002G263100--Sobic004G260200 Sobic002G263100--Sobic003G296800 Sobic002G263100--Sobic003G215700 Sobic002G263100--Sobic001G286200 Sobic002G263100--Sobic001G404800 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic001G047800--Sobic002G418400 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic001G047800--Sobic002G263100 Sobic001G047800--Sobic004G060500 Sobic001G047800--Sobic007G134900 Sobic001G047800--Sobic001G519000 Sobic007G161700--Sobic002G296200 Sobic007G161700--Sobic003G296800 Sobic007G161700--Sobic001G286200 Sobic007G161700--Sobic002G263100 Sobic007G161700--Sobic009G173500 Sobic007G161700--Sobic007G134900 Sobic006G013000 Sobic006G013000 Sobic007G161700--Sobic006G013000 Sobic007G161700--Sobic001G047800 Sobic007G161700--Sobic002G308300 Sobic001G286200--Sobic002G078300 Sobic001G286200--Sobic010G264300 Sobic001G304400 Sobic001G304400 Sobic001G286200--Sobic001G304400 Sobic001G286200--Sobic007G211500 Sobic001G286200--Sobic002G296200 Sobic001G286200--Sobic007G134900 Sobic009G212200 Sobic009G212200 Sobic001G286200--Sobic009G212200 Sobic001G286200--Sobic002G308300 Sobic001G286200--Sobic002G263100 Sobic004G060500--Sobic003G215700 Sobic009G176000 Sobic009G176000 Sobic004G060500--Sobic009G176000 Sobic004G060500--Sobic001G519000 Sobic004G060500--Sobic001G047800 Sobic006G083500 Sobic006G083500 Sobic004G060500--Sobic006G083500 Sobic004G060500--Sobic002G418400 Sobic004G060500--Sobic002G309700 Sobic004G060500--Sobic002G296200 Sobic004G060500--Sobic010G059300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.