Gene annotation
Transcriptome id Sobic.003G218400.1
Synonym Sb03g027710
Functional annotation cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed
UniProt C5XQZ8
Pfam PF01215
Panther DB PTHR10122 PTHR10122:SF3
NCBI CDD -
KEGG Orthology K02265; cytochrome c oxidase subunit 5b
Gene Ontology GO:0005740; mitochondrial envelope GO:0004129cytochrome-c oxidase activity


Orthologs (automatic annotation)
TAIR AT1G80230 : Rubredoxin-like superfamily protein
RAP-DB (Rice) LOC_Os01g42650.1 : cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a038490 , Zm00025a028703
Brachypodium KQK08692
Barley -
Wheat TraesCS3B02G249500 , TraesCS3D02G233400 , TraesCS3A02G219100
Populus -


JBrowse

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cDNA sequences
Sobic.003G218400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
2 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
3 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
4 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
5 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
6 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
7 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
8 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
9 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
10 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
11 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
12 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
13 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
14 Sobic.009G215300 fiber protein Fb11, putative, expressed -
15 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
16 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
17 Sobic.002G136700 expressed protein -
18 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
19 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
20 Sobic.004G060500 fiber protein Fb15, putative, expressed -


Gene co-expression network
sample Sobic003G218400 Sobic003G218400 Sobic001G047800 Sobic001G047800 Sobic003G218400--Sobic001G047800 Sobic004G260200 Sobic004G260200 Sobic003G218400--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic003G218400--Sobic002G309700 Sobic002G418400 Sobic002G418400 Sobic003G218400--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic003G218400--Sobic003G215700 Sobic001G404800 Sobic001G404800 Sobic003G218400--Sobic001G404800 Sobic007G013900 Sobic007G013900 Sobic003G218400--Sobic007G013900 Sobic004G170400 Sobic004G170400 Sobic003G218400--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic003G218400--Sobic001G074700 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic001G047800--Sobic002G418400 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic002G263100 Sobic002G263100 Sobic001G047800--Sobic002G263100 Sobic004G060500 Sobic004G060500 Sobic001G047800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G047800--Sobic007G134900 Sobic001G519000 Sobic001G519000 Sobic001G047800--Sobic001G519000 Sobic004G260200--Sobic002G309700 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic002G395000 Sobic002G395000 Sobic004G260200--Sobic002G395000 Sobic002G356400 Sobic002G356400 Sobic004G260200--Sobic002G356400 Sobic004G260200--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic004G260200--Sobic009G215300 Sobic004G260200--Sobic002G263100 Sobic004G260200--Sobic001G074700 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic002G309700--Sobic003G215700 Sobic006G083500 Sobic006G083500 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic002G418400--Sobic003G209000 Sobic002G398901 Sobic002G398901 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic003G215700--Sobic010G012500 Sobic001G404800--Sobic003G209000 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic001G404800--Sobic002G356400 Sobic001G404800--Sobic002G309700 Sobic001G404800--Sobic006G083500 Sobic001G404800--Sobic004G260200 Sobic007G013900--Sobic009G215300 Sobic004G159000 Sobic004G159000 Sobic007G013900--Sobic004G159000 Sobic002G260200 Sobic002G260200 Sobic007G013900--Sobic002G260200 Sobic006G013000 Sobic006G013000 Sobic007G013900--Sobic006G013000 Sobic007G013900--Sobic002G309700 Sobic001G031800 Sobic001G031800 Sobic007G013900--Sobic001G031800 Sobic007G013900--Sobic004G260200 Sobic007G013900--Sobic002G395000 Sobic008G136800 Sobic008G136800 Sobic007G013900--Sobic008G136800 Sobic001G350600 Sobic001G350600 Sobic004G170400--Sobic001G350600 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic004G170400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic004G170400--Sobic009G119900 Sobic004G170400--Sobic002G356400 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic004G170400--Sobic002G418400 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic001G074700--Sobic004G259200 Sobic001G074700--Sobic002G309700 Sobic010G154700 Sobic010G154700 Sobic001G074700--Sobic010G154700 Sobic001G074700--Sobic002G296200 Sobic001G074700--Sobic009G119900 Sobic001G074700--Sobic001G047800 Sobic001G074700--Sobic002G418400
Octagon: transcription factors


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