Gene annotation
Transcriptome id Sobic.002G308300.3,Sobic.002G308300.2,Sobic.002G308300.1
Synonym Sb02g033820
Functional annotation expressed protein
UniProt A0A1W0W6K1 , C5X985 , A0A1W0W6E1
Pfam -
Panther DB PTHR36052
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20150 : -
RAP-DB (Rice) LOC_Os07g31490.1 : expressed protein
MaizeGDB (Corn) Zm00025a014705
Brachypodium -
Barley HORVU2Hr1G049640.1 , HORVU2Hr1G049640.3 , HORVU2Hr1G049640.2 , HORVU2Hr1G051150.4 , HORVU2Hr1G051150.1 , HORVU2Hr1G051150.2 , HORVU2Hr1G051150.3
Wheat TraesCS2B02G251800 , TraesCS2D02G233900 , TraesCS2A02G230200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G308300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
2 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
3 Sobic.001G347901 - -
4 Sobic.009G016500 expressed protein -
5 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
6 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
7 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
8 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
9 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
10 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
11 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
12 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
13 Sobic.002G296200 expressed protein -
14 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
15 Sobic.009G215300 fiber protein Fb11, putative, expressed -
16 Sobic.007G211500 expressed protein -
17 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
18 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
19 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
20 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e


Gene co-expression network
sample Sobic002G308300 Sobic002G308300 Sobic001G286200 Sobic001G286200 Sobic002G308300--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic002G308300--Sobic010G264300 Sobic001G347901 Sobic001G347901 Sobic002G308300--Sobic001G347901 Sobic009G016500 Sobic009G016500 Sobic002G308300--Sobic009G016500 Sobic002G309700 Sobic002G309700 Sobic002G308300--Sobic002G309700 Sobic001G282500 Sobic001G282500 Sobic002G308300--Sobic001G282500 Sobic001G370700 Sobic001G370700 Sobic002G308300--Sobic001G370700 Sobic002G180300 Sobic002G180300 Sobic002G308300--Sobic002G180300 Sobic002G078300 Sobic002G078300 Sobic002G308300--Sobic002G078300 Sobic001G286200--Sobic002G078300 Sobic001G286200--Sobic010G264300 Sobic001G304400 Sobic001G304400 Sobic001G286200--Sobic001G304400 Sobic007G211500 Sobic007G211500 Sobic001G286200--Sobic007G211500 Sobic002G296200 Sobic002G296200 Sobic001G286200--Sobic002G296200 Sobic007G134900 Sobic007G134900 Sobic001G286200--Sobic007G134900 Sobic009G212200 Sobic009G212200 Sobic001G286200--Sobic009G212200 Sobic001G286200--Sobic002G308300 Sobic002G263100 Sobic002G263100 Sobic001G286200--Sobic002G263100 Sobic010G264300--Sobic001G286200 Sobic010G264300--Sobic002G078300 Sobic010G264300--Sobic002G308300 Sobic001G519000 Sobic001G519000 Sobic010G264300--Sobic001G519000 Sobic002G356400 Sobic002G356400 Sobic010G264300--Sobic002G356400 Sobic010G264300--Sobic009G212200 Sobic010G264300--Sobic001G370700 Sobic010G264300--Sobic001G304400 Sobic010G264300--Sobic002G180300 Sobic004G342400 Sobic004G342400 Sobic001G347901--Sobic004G342400 Sobic001G347901--Sobic002G308300 Sobic001G347901--Sobic009G016500 Sobic009G179100 Sobic009G179100 Sobic001G347901--Sobic009G179100 Sobic001G347901--Sobic001G370700 Sobic009G233400 Sobic009G233400 Sobic001G347901--Sobic009G233400 Sobic002G415500 Sobic002G415500 Sobic001G347901--Sobic002G415500 Sobic009G173500 Sobic009G173500 Sobic001G347901--Sobic009G173500 Sobic001G334300 Sobic001G334300 Sobic001G347901--Sobic001G334300 Sobic009G016500--Sobic001G347901 Sobic009G016500--Sobic002G308300 Sobic009G016500--Sobic001G286200 Sobic001G473400 Sobic001G473400 Sobic009G016500--Sobic001G473400 Sobic009G016500--Sobic001G370700 Sobic009G016500--Sobic010G264300 Sobic010G258000 Sobic010G258000 Sobic009G016500--Sobic010G258000 Sobic009G016500--Sobic002G078300 Sobic008G136800 Sobic008G136800 Sobic009G016500--Sobic008G136800 Sobic004G260200 Sobic004G260200 Sobic002G309700--Sobic004G260200 Sobic001G047800 Sobic001G047800 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic009G215300 Sobic009G215300 Sobic002G309700--Sobic009G215300 Sobic001G404800 Sobic001G404800 Sobic002G309700--Sobic001G404800 Sobic001G074700 Sobic001G074700 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic001G282500--Sobic002G309700 Sobic001G282500--Sobic009G215300 Sobic001G282500--Sobic004G260200 Sobic001G282500--Sobic002G356400 Sobic002G395000 Sobic002G395000 Sobic001G282500--Sobic002G395000 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic003G135600 Sobic003G135600 Sobic001G282500--Sobic003G135600 Sobic001G350600 Sobic001G350600 Sobic001G282500--Sobic001G350600 Sobic001G370700--Sobic010G264300 Sobic001G370700--Sobic002G309700 Sobic001G370700--Sobic002G308300 Sobic001G370700--Sobic002G180300 Sobic001G370700--Sobic002G078300 Sobic001G370700--Sobic001G347901 Sobic003G261100 Sobic003G261100 Sobic001G370700--Sobic003G261100 Sobic001G370700--Sobic009G179100 Sobic001G370700--Sobic004G260200 Sobic002G180300--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic002G180300--Sobic006G013000 Sobic002G180300--Sobic002G356400 Sobic002G180300--Sobic009G179100 Sobic009G115700 Sobic009G115700 Sobic002G180300--Sobic009G115700 Sobic002G180300--Sobic010G264300 Sobic002G180300--Sobic001G404800 Sobic002G180300--Sobic001G370700 Sobic002G180300--Sobic002G308300 Sobic002G078300--Sobic001G286200 Sobic002G078300--Sobic010G264300 Sobic002G078300--Sobic004G260200 Sobic002G078300--Sobic002G395000 Sobic002G078300--Sobic002G309700 Sobic002G078300--Sobic007G211500 Sobic002G078300--Sobic002G356400 Sobic002G078300--Sobic001G370700 Sobic002G078300--Sobic002G308300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.