Gene annotation
Transcriptome id Sobic.002G180300.1
Synonym VDAC1, Sb02g022910, ATVDAC1
Functional annotation isochorismate synthase 1, chloroplast precursor, putative, expressed
UniProt C5XAN7
Pfam PF01459
Panther DB PTHR11743 PTHR11743:SF34
NCBI CDD KOG3126; Porin/voltage-dependent anion-selective channel protein
KEGG Orthology K15040; voltage-dependent anion channel protein 2
Gene Ontology GO:0005741; mitochondrial outer membrane


Orthologs (automatic annotation)
TAIR AT3G01280 : voltage dependent anion channel 1
RAP-DB (Rice) LOC_Os09g19734.3 : isochorismate synthase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a013809 , Zm00025a027788 , Zm00025a046660
Brachypodium KQJ89949
Barley -
Wheat TraesCS5D02G196100
Populus PNS95791


JBrowse

Open New Page


cDNA sequences
Sobic.002G180300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
2 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
3 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
4 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
5 Sobic.009G115700 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
6 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
7 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
8 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
9 Sobic.002G308300 expressed protein -
10 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
11 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
12 Sobic.002G415500 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
13 Sobic.007G134900 expressed protein -
14 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
15 Sobic.002G296200 expressed protein -
16 Sobic.009G215300 fiber protein Fb11, putative, expressed -
17 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
18 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
19 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
20 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e


Gene co-expression network
sample Sobic002G180300 Sobic002G180300 Sobic002G309700 Sobic002G309700 Sobic002G180300--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic002G180300--Sobic006G013000 Sobic002G356400 Sobic002G356400 Sobic002G180300--Sobic002G356400 Sobic009G179100 Sobic009G179100 Sobic002G180300--Sobic009G179100 Sobic009G115700 Sobic009G115700 Sobic002G180300--Sobic009G115700 Sobic010G264300 Sobic010G264300 Sobic002G180300--Sobic010G264300 Sobic001G404800 Sobic001G404800 Sobic002G180300--Sobic001G404800 Sobic001G370700 Sobic001G370700 Sobic002G180300--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic002G180300--Sobic002G308300 Sobic004G260200 Sobic004G260200 Sobic002G309700--Sobic004G260200 Sobic001G047800 Sobic001G047800 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic009G215300 Sobic009G215300 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic001G074700 Sobic001G074700 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic006G013000--Sobic002G296200 Sobic006G013000--Sobic002G309700 Sobic006G013000--Sobic001G074700 Sobic006G013000--Sobic002G180300 Sobic006G013000--Sobic001G047800 Sobic007G013900 Sobic007G013900 Sobic006G013000--Sobic007G013900 Sobic007G134900 Sobic007G134900 Sobic006G013000--Sobic007G134900 Sobic006G013000--Sobic001G404800 Sobic006G013000--Sobic009G215300 Sobic002G356400--Sobic002G309700 Sobic002G356400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic002G356400--Sobic009G119900 Sobic001G350600 Sobic001G350600 Sobic002G356400--Sobic001G350600 Sobic004G170400 Sobic004G170400 Sobic002G356400--Sobic004G170400 Sobic002G356400--Sobic004G260200 Sobic002G356400--Sobic001G404800 Sobic004G259200 Sobic004G259200 Sobic002G356400--Sobic004G259200 Sobic003G209000 Sobic003G209000 Sobic002G356400--Sobic003G209000 Sobic002G304900 Sobic002G304900 Sobic009G179100--Sobic002G304900 Sobic009G101700 Sobic009G101700 Sobic009G179100--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic009G179100--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic009G179100--Sobic001G334300 Sobic005G050500 Sobic005G050500 Sobic009G179100--Sobic005G050500 Sobic009G233400 Sobic009G233400 Sobic009G179100--Sobic009G233400 Sobic003G387900 Sobic003G387900 Sobic009G179100--Sobic003G387900 Sobic001G039400 Sobic001G039400 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500 Sobic002G415500 Sobic002G415500 Sobic009G115700--Sobic002G415500 Sobic009G115700--Sobic009G233400 Sobic009G115700--Sobic001G334300 Sobic009G115700--Sobic002G304900 Sobic009G115700--Sobic005G050500 Sobic009G115700--Sobic007G134900 Sobic002G135200 Sobic002G135200 Sobic009G115700--Sobic002G135200 Sobic001G058900 Sobic001G058900 Sobic009G115700--Sobic001G058900 Sobic009G191200 Sobic009G191200 Sobic009G115700--Sobic009G191200 Sobic001G286200 Sobic001G286200 Sobic010G264300--Sobic001G286200 Sobic002G078300 Sobic002G078300 Sobic010G264300--Sobic002G078300 Sobic010G264300--Sobic002G308300 Sobic001G519000 Sobic001G519000 Sobic010G264300--Sobic001G519000 Sobic010G264300--Sobic002G356400 Sobic009G212200 Sobic009G212200 Sobic010G264300--Sobic009G212200 Sobic010G264300--Sobic001G370700 Sobic001G304400 Sobic001G304400 Sobic010G264300--Sobic001G304400 Sobic010G264300--Sobic002G180300 Sobic001G404800--Sobic003G209000 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic001G404800--Sobic002G418400 Sobic001G404800--Sobic002G356400 Sobic001G404800--Sobic002G309700 Sobic006G083500 Sobic006G083500 Sobic001G404800--Sobic006G083500 Sobic001G404800--Sobic004G260200 Sobic001G370700--Sobic010G264300 Sobic001G370700--Sobic002G309700 Sobic001G370700--Sobic002G308300 Sobic001G370700--Sobic002G180300 Sobic001G370700--Sobic002G078300 Sobic001G347901 Sobic001G347901 Sobic001G370700--Sobic001G347901 Sobic003G261100 Sobic003G261100 Sobic001G370700--Sobic003G261100 Sobic001G370700--Sobic009G179100 Sobic001G370700--Sobic004G260200 Sobic002G308300--Sobic001G286200 Sobic002G308300--Sobic010G264300 Sobic002G308300--Sobic001G347901 Sobic009G016500 Sobic009G016500 Sobic002G308300--Sobic009G016500 Sobic002G308300--Sobic002G309700 Sobic001G282500 Sobic001G282500 Sobic002G308300--Sobic001G282500 Sobic002G308300--Sobic001G370700 Sobic002G308300--Sobic002G180300 Sobic002G308300--Sobic002G078300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.