Gene annotation
Transcriptome id Sobic.009G115700.1
Synonym Sb09g018320
Functional annotation 40S ribosomal protein S4, putative, expressed
UniProt C5YX57
Pfam PF00467 PF08071 PF16121 PF00900
Panther DB PTHR11581
NCBI CDD KOG0378; 40S ribosomal protein S4
KEGG Orthology K02987; RP-S4e, small subunit ribosomal protein S4e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G58420 : Ribosomal protein S4 (RPS4A) family protein
RAP-DB (Rice) LOC_Os05g30530.1 : 40S ribosomal protein S4, putative, expressed
MaizeGDB (Corn) Zm00025a004145 , Zm00025a016357 , Zm00025a050686 , Zm00025a008970
Brachypodium KQK07461
Barley HORVU1Hr1G021720.4 , HORVU1Hr1G021720.3 , HORVU1Hr1G021720.2 , HORVU1Hr1G021720.1
Wheat TraesCS1B02G120600 , TraesCS1A02G232700
Populus -


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cDNA sequences
Sobic.009G115700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G415500 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
2 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
3 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
4 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
5 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
6 Sobic.007G134900 expressed protein -
7 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
8 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
9 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
11 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
12 Sobic.002G296200 expressed protein -
13 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
14 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
15 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
16 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
17 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
18 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
19 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
20 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e


Gene co-expression network
sample Sobic009G115700 Sobic009G115700 Sobic002G415500 Sobic002G415500 Sobic009G115700--Sobic002G415500 Sobic009G233400 Sobic009G233400 Sobic009G115700--Sobic009G233400 Sobic001G334300 Sobic001G334300 Sobic009G115700--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic009G115700--Sobic002G304900 Sobic005G050500 Sobic005G050500 Sobic009G115700--Sobic005G050500 Sobic007G134900 Sobic007G134900 Sobic009G115700--Sobic007G134900 Sobic002G135200 Sobic002G135200 Sobic009G115700--Sobic002G135200 Sobic001G058900 Sobic001G058900 Sobic009G115700--Sobic001G058900 Sobic009G191200 Sobic009G191200 Sobic009G115700--Sobic009G191200 Sobic002G415500--Sobic009G115700 Sobic002G415500--Sobic001G334300 Sobic002G415500--Sobic009G233400 Sobic007G019400 Sobic007G019400 Sobic002G415500--Sobic007G019400 Sobic002G415500--Sobic002G304900 Sobic002G415500--Sobic001G058900 Sobic009G076400 Sobic009G076400 Sobic002G415500--Sobic009G076400 Sobic009G227400 Sobic009G227400 Sobic002G415500--Sobic009G227400 Sobic001G039400 Sobic001G039400 Sobic002G415500--Sobic001G039400 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic003G249700 Sobic003G249700 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic001G085400 Sobic001G085400 Sobic009G233400--Sobic001G085400 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic001G334300--Sobic003G387900 Sobic009G144300 Sobic009G144300 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic002G056200 Sobic002G056200 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic002G296200 Sobic002G296200 Sobic007G134900--Sobic002G296200 Sobic002G263100 Sobic002G263100 Sobic007G134900--Sobic002G263100 Sobic001G519000 Sobic001G519000 Sobic007G134900--Sobic001G519000 Sobic001G047800 Sobic001G047800 Sobic007G134900--Sobic001G047800 Sobic003G215700 Sobic003G215700 Sobic007G134900--Sobic003G215700 Sobic009G223300 Sobic009G223300 Sobic007G134900--Sobic009G223300 Sobic001G286200 Sobic001G286200 Sobic007G134900--Sobic001G286200 Sobic002G309700 Sobic002G309700 Sobic007G134900--Sobic002G309700 Sobic009G173500 Sobic009G173500 Sobic007G134900--Sobic009G173500 Sobic004G198400 Sobic004G198400 Sobic002G135200--Sobic004G198400 Sobic002G374900 Sobic002G374900 Sobic002G135200--Sobic002G374900 Sobic002G379500 Sobic002G379500 Sobic002G135200--Sobic002G379500 Sobic001G011200 Sobic001G011200 Sobic002G135200--Sobic001G011200 Sobic001G175300 Sobic001G175300 Sobic002G135200--Sobic001G175300 Sobic007G018300 Sobic007G018300 Sobic002G135200--Sobic007G018300 Sobic002G135200--Sobic009G223300 Sobic001G091801 Sobic001G091801 Sobic002G135200--Sobic001G091801 Sobic001G533500 Sobic001G533500 Sobic002G135200--Sobic001G533500 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic009G191200--Sobic009G233400 Sobic009G191200--Sobic008G135000 Sobic009G191200--Sobic001G334300 Sobic009G191200--Sobic001G058900 Sobic009G191200--Sobic002G115000 Sobic009G191200--Sobic002G049300 Sobic003G280700 Sobic003G280700 Sobic009G191200--Sobic003G280700 Sobic009G191200--Sobic001G085400 Sobic009G191200--Sobic002G304900
Octagon: transcription factors


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