Gene annotation
Transcriptome id Sobic.002G415500.1
Synonym Sb02g042750
Functional annotation 60S ribosomal protein L18-3, putative, expressed
UniProt C5X5J2
Pfam -
Panther DB PTHR10934 PTHR10934:SF3
NCBI CDD KOG1714; 60s ribosomal protein L18
KEGG Orthology K02883; RP-L18e, large subunit ribosomal protein L18e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G27850 : Ribosomal protein L18e/L15 superfamily protein
RAP-DB (Rice) LOC_Os07g47780.2 : 60S ribosomal protein L18-3, putative, expressed
MaizeGDB (Corn) Zm00025a049132
Brachypodium KQK07400 , KQK07401 , KQK14671 , KQK21763
Barley HORVU1Hr1G022570.3 , HORVU1Hr1G022570.2 , HORVU1Hr1G022570.1 , HORVU2Hr1G018840.1 , HORVU2Hr1G018840.3 , HORVU2Hr1G018840.2 , HORVU2Hr1G018840.5 , HORVU2Hr1G018820.2 , HORVU2Hr1G018820.1 , HORVU2Hr1G018840.6 , HORVU2Hr1G018820.3 , HORVU2Hr1G018840.4
Wheat TraesCS4B02G166800 , TraesCS4D02G169400 , TraesCS2D02G110100 , TraesCS2A02G109900 , TraesCS1A02G096500 , TraesCS2B02G127900 , TraesCS1D02G105500 , TraesCS1D02G105500
Populus -


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cDNA sequences
Sobic.002G415500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G115700 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
2 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
3 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
4 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
5 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
6 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
7 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
8 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
9 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
10 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
11 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
13 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
14 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
15 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
16 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
17 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
18 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
19 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
20 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e


Gene co-expression network
sample Sobic002G415500 Sobic002G415500 Sobic009G115700 Sobic009G115700 Sobic002G415500--Sobic009G115700 Sobic001G334300 Sobic001G334300 Sobic002G415500--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G415500--Sobic009G233400 Sobic007G019400 Sobic007G019400 Sobic002G415500--Sobic007G019400 Sobic002G304900 Sobic002G304900 Sobic002G415500--Sobic002G304900 Sobic001G058900 Sobic001G058900 Sobic002G415500--Sobic001G058900 Sobic009G076400 Sobic009G076400 Sobic002G415500--Sobic009G076400 Sobic009G227400 Sobic009G227400 Sobic002G415500--Sobic009G227400 Sobic001G039400 Sobic001G039400 Sobic002G415500--Sobic001G039400 Sobic009G115700--Sobic002G415500 Sobic009G115700--Sobic009G233400 Sobic009G115700--Sobic001G334300 Sobic009G115700--Sobic002G304900 Sobic005G050500 Sobic005G050500 Sobic009G115700--Sobic005G050500 Sobic007G134900 Sobic007G134900 Sobic009G115700--Sobic007G134900 Sobic002G135200 Sobic002G135200 Sobic009G115700--Sobic002G135200 Sobic009G115700--Sobic001G058900 Sobic009G191200 Sobic009G191200 Sobic009G115700--Sobic009G191200 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic001G334300--Sobic003G387900 Sobic009G144300 Sobic009G144300 Sobic001G334300--Sobic009G144300 Sobic001G085400 Sobic001G085400 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic003G249700 Sobic003G249700 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic007G019400--Sobic003G249700 Sobic007G019400--Sobic009G076400 Sobic002G047600 Sobic002G047600 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic006G213000 Sobic006G213000 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic007G053300 Sobic007G053300 Sobic009G076400--Sobic007G053300 Sobic006G137100 Sobic006G137100 Sobic009G076400--Sobic006G137100 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic004G008400 Sobic004G008400 Sobic009G076400--Sobic004G008400 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic001G039400--Sobic010G069400 Sobic001G039400--Sobic002G304900 Sobic001G039400--Sobic009G233400 Sobic009G173500 Sobic009G173500 Sobic001G039400--Sobic009G173500 Sobic001G039400--Sobic007G019400 Sobic001G039400--Sobic002G047600 Sobic001G039400--Sobic005G050500
Octagon: transcription factors


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