Gene annotation
Transcriptome id Sobic.001G510800.1
Synonym Sb01g047680
Functional annotation ribosomal protein, putative, expressed
UniProt -
Pfam PF00238
Panther DB PTHR11761 PTHR11761:SF10
NCBI CDD KOG0901; 60S ribosomal protein L14/L17/L23
KEGG Orthology K02894; RP-L23e, large subunit ribosomal protein L23e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G04480 : Ribosomal protein L14p/L23e family protein
RAP-DB (Rice) LOC_Os03g04590.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a053389 , Zm00025a017667 , Zm00025a000542
Brachypodium KQK23743 , KQJ97013
Barley HORVU1Hr1G039160.1 , HORVU1Hr1G039160.2 , HORVU1Hr1G039160.4 , HORVU4Hr1G083840.2 , HORVU4Hr1G083840.1
Wheat TraesCS1B02G166100 , TraesCS5A02G509200 , TraesCS6A02G385700 , TraesCS1D02G146100 , TraesCS1A02G148400 , TraesCS4B02G339500 , TraesCS6B02G424800 , TraesCS4D02G335700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G510800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G005300 ribosomal protein L6, putative, expressed K02940: RP-L9e, large subunit ribosomal protein L9e
2 Sobic.002G179300 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
3 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
4 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
5 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
6 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
7 Sobic.002G415500 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
9 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
10 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
11 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
12 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
13 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
14 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
15 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
16 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
17 Sobic.001G304400 expressed protein -
18 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
19 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
20 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae


Gene co-expression network
sample Sobic001G510800 Sobic001G510800 Sobic010G005300 Sobic010G005300 Sobic001G510800--Sobic010G005300 Sobic002G179300 Sobic002G179300 Sobic001G510800--Sobic002G179300 Sobic001G058900 Sobic001G058900 Sobic001G510800--Sobic001G058900 Sobic008G100000 Sobic008G100000 Sobic001G510800--Sobic008G100000 Sobic008G108601 Sobic008G108601 Sobic001G510800--Sobic008G108601 Sobic001G225700 Sobic001G225700 Sobic001G510800--Sobic001G225700 Sobic002G415500 Sobic002G415500 Sobic001G510800--Sobic002G415500 Sobic006G057200 Sobic006G057200 Sobic001G510800--Sobic006G057200 Sobic009G227400 Sobic009G227400 Sobic001G510800--Sobic009G227400 Sobic010G005300--Sobic001G510800 Sobic010G005300--Sobic001G058900 Sobic010G005300--Sobic002G415500 Sobic009G233400 Sobic009G233400 Sobic010G005300--Sobic009G233400 Sobic010G005300--Sobic008G100000 Sobic001G039400 Sobic001G039400 Sobic010G005300--Sobic001G039400 Sobic008G135000 Sobic008G135000 Sobic010G005300--Sobic008G135000 Sobic002G304900 Sobic002G304900 Sobic010G005300--Sobic002G304900 Sobic010G005300--Sobic001G225700 Sobic010G070500 Sobic010G070500 Sobic002G179300--Sobic010G070500 Sobic004G008400 Sobic004G008400 Sobic002G179300--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic002G179300--Sobic002G286900 Sobic002G179300--Sobic008G108601 Sobic007G178600 Sobic007G178600 Sobic002G179300--Sobic007G178600 Sobic002G179300--Sobic006G057200 Sobic003G387900 Sobic003G387900 Sobic002G179300--Sobic003G387900 Sobic002G179300--Sobic001G510800 Sobic001G334300 Sobic001G334300 Sobic002G179300--Sobic001G334300 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic002G049300 Sobic002G049300 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic008G100000--Sobic008G098800 Sobic008G100000--Sobic001G510800 Sobic008G100000--Sobic001G058900 Sobic008G094600 Sobic008G094600 Sobic008G100000--Sobic008G094600 Sobic004G002350 Sobic004G002350 Sobic008G100000--Sobic004G002350 Sobic008G100000--Sobic010G005300 Sobic008G100000--Sobic002G286900 Sobic008G100000--Sobic002G304900 Sobic008G100000--Sobic008G108601 Sobic008G108601--Sobic007G178600 Sobic008G108601--Sobic004G008400 Sobic008G108601--Sobic002G286900 Sobic008G108601--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic008G108601--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic008G108601--Sobic007G019400 Sobic010G206200 Sobic010G206200 Sobic008G108601--Sobic010G206200 Sobic008G108601--Sobic002G049300 Sobic001G226500 Sobic001G226500 Sobic008G108601--Sobic001G226500 Sobic001G225700--Sobic003G249700 Sobic006G081100 Sobic006G081100 Sobic001G225700--Sobic006G081100 Sobic001G225700--Sobic008G108601 Sobic001G225700--Sobic007G178600 Sobic001G225700--Sobic002G047600 Sobic001G225700--Sobic002G286900 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic001G225700--Sobic002G115000 Sobic009G115700 Sobic009G115700 Sobic002G415500--Sobic009G115700 Sobic002G415500--Sobic001G334300 Sobic002G415500--Sobic009G233400 Sobic002G415500--Sobic007G019400 Sobic002G415500--Sobic002G304900 Sobic002G415500--Sobic001G058900 Sobic009G076400 Sobic009G076400 Sobic002G415500--Sobic009G076400 Sobic002G415500--Sobic009G227400 Sobic002G415500--Sobic001G039400 Sobic006G057200--Sobic002G179300 Sobic006G057200--Sobic007G178600 Sobic010G069400 Sobic010G069400 Sobic006G057200--Sobic010G069400 Sobic006G057200--Sobic004G008400 Sobic004G244800 Sobic004G244800 Sobic006G057200--Sobic004G244800 Sobic006G057200--Sobic010G070500 Sobic001G508900 Sobic001G508900 Sobic006G057200--Sobic001G508900 Sobic006G057200--Sobic002G286900 Sobic003G078200 Sobic003G078200 Sobic006G057200--Sobic003G078200 Sobic009G227400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic009G227400--Sobic009G144300 Sobic006G137100 Sobic006G137100 Sobic009G227400--Sobic006G137100 Sobic009G227400--Sobic002G286900 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.