Gene annotation
Transcriptome id Sobic.006G057200.1
Synonym Sb06g014530
Functional annotation L11 domain containing ribosomal protein, putative, expressed
UniProt C5Y0E9
Pfam PF00298 PF03946
Panther DB PTHR11661 PTHR11661:SF6
NCBI CDD KOG0886; 40S ribosomal protein S2
KEGG Orthology K02870; RP-L12e, large subunit ribosomal protein L12e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G37190 : Ribosomal protein L11 family protein
RAP-DB (Rice) LOC_Os02g47140.2 : L11 domain containing ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a011680 , Zm00025a009963 , Zm00025a032407 , Zm00025a021660 , Zm00025a012984 , Zm00025a041820
Brachypodium KQK00885 , KQJ84362
Barley HORVU2Hr1G102610.1 , HORVU6Hr1G067870.1
Wheat TraesCS6B02G295500
Populus -


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cDNA sequences
Sobic.006G057200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G179300 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
2 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
3 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
4 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
5 Sobic.004G244800 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
6 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
7 Sobic.001G508900 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
8 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
9 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
10 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
11 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
12 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
13 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
14 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
15 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
17 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
18 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
19 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
20 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e


Gene co-expression network
sample Sobic006G057200 Sobic006G057200 Sobic002G179300 Sobic002G179300 Sobic006G057200--Sobic002G179300 Sobic007G178600 Sobic007G178600 Sobic006G057200--Sobic007G178600 Sobic010G069400 Sobic010G069400 Sobic006G057200--Sobic010G069400 Sobic004G008400 Sobic004G008400 Sobic006G057200--Sobic004G008400 Sobic004G244800 Sobic004G244800 Sobic006G057200--Sobic004G244800 Sobic010G070500 Sobic010G070500 Sobic006G057200--Sobic010G070500 Sobic001G508900 Sobic001G508900 Sobic006G057200--Sobic001G508900 Sobic002G286900 Sobic002G286900 Sobic006G057200--Sobic002G286900 Sobic003G078200 Sobic003G078200 Sobic006G057200--Sobic003G078200 Sobic002G179300--Sobic010G070500 Sobic002G179300--Sobic004G008400 Sobic002G179300--Sobic002G286900 Sobic008G108601 Sobic008G108601 Sobic002G179300--Sobic008G108601 Sobic002G179300--Sobic007G178600 Sobic002G179300--Sobic006G057200 Sobic003G387900 Sobic003G387900 Sobic002G179300--Sobic003G387900 Sobic001G510800 Sobic001G510800 Sobic002G179300--Sobic001G510800 Sobic001G334300 Sobic001G334300 Sobic002G179300--Sobic001G334300 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic007G178600--Sobic009G050300 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic010G069400--Sobic003G387900 Sobic009G233400 Sobic009G233400 Sobic010G069400--Sobic009G233400 Sobic001G039400 Sobic001G039400 Sobic010G069400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic010G069400--Sobic005G050500 Sobic002G304900 Sobic002G304900 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic004G349700 Sobic004G349700 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic001G085400 Sobic001G085400 Sobic010G069400--Sobic001G085400 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic006G116700 Sobic006G116700 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic007G197800 Sobic007G197800 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic006G137100 Sobic006G137100 Sobic004G008400--Sobic006G137100 Sobic002G379500 Sobic002G379500 Sobic004G008400--Sobic002G379500 Sobic004G244800--Sobic006G057200 Sobic004G244800--Sobic002G179300 Sobic004G244800--Sobic010G069400 Sobic004G244800--Sobic001G510800 Sobic001G225700 Sobic001G225700 Sobic004G244800--Sobic001G225700 Sobic004G244800--Sobic008G108601 Sobic008G135000 Sobic008G135000 Sobic004G244800--Sobic008G135000 Sobic001G175300 Sobic001G175300 Sobic004G244800--Sobic001G175300 Sobic002G049300 Sobic002G049300 Sobic004G244800--Sobic002G049300 Sobic001G226500 Sobic001G226500 Sobic010G070500--Sobic001G226500 Sobic010G070500--Sobic004G008400 Sobic010G070500--Sobic008G108601 Sobic010G251600 Sobic010G251600 Sobic010G070500--Sobic010G251600 Sobic004G055100 Sobic004G055100 Sobic010G070500--Sobic004G055100 Sobic010G070500--Sobic002G179300 Sobic010G070500--Sobic002G286900 Sobic010G070500--Sobic003G078200 Sobic010G070500--Sobic003G249700 Sobic001G508900--Sobic007G178600 Sobic002G414700 Sobic002G414700 Sobic001G508900--Sobic002G414700 Sobic001G508900--Sobic001G175300 Sobic001G508900--Sobic010G251600 Sobic001G508900--Sobic003G436700 Sobic010G206200 Sobic010G206200 Sobic001G508900--Sobic010G206200 Sobic001G508900--Sobic003G078200 Sobic004G271400 Sobic004G271400 Sobic001G508900--Sobic004G271400 Sobic001G508900--Sobic004G008400 Sobic002G286900--Sobic006G137100 Sobic002G286900--Sobic008G108601 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic002G286900--Sobic001G226500 Sobic001G403500 Sobic001G403500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic005G110800 Sobic005G110800 Sobic002G286900--Sobic005G110800 Sobic002G286900--Sobic007G178600 Sobic002G372400 Sobic002G372400 Sobic003G078200--Sobic002G372400 Sobic009G054800 Sobic009G054800 Sobic003G078200--Sobic009G054800 Sobic003G078200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic003G078200--Sobic005G019700 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic003G078200--Sobic006G116700
Octagon: transcription factors


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