Gene annotation
Transcriptome id Sobic.008G021100.1
Synonym Sb08g001870
Functional annotation ribosomal protein, putative, expressed
UniProt C5YR16
Pfam PF00380
Panther DB PTHR21569 PTHR21569:SF6
NCBI CDD KOG1753; 40S ribosomal protein S16
KEGG Orthology K02960; RP-S16e, small subunit ribosomal protein S16e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G09990 : Ribosomal protein S5 domain 2-like superfamily protein
RAP-DB (Rice) LOC_Os12g03090.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a028997 , Zm00025a013144 , Zm00025a053747 , Zm00025a033364
Brachypodium KQJ89511 , KQJ92485
Barley HORVU4Hr1G023530.1 , HORVU4Hr1G023530.2 , HORVU4Hr1G023570.1 , HORVU4Hr1G023570.2 , HORVU5Hr1G045620.1
Wheat -
Populus -


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cDNA sequences
Sobic.008G021100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
2 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
3 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
4 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
5 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
6 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
8 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
9 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
10 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
11 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
12 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
13 Sobic.002G415500 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
14 Sobic.006G106100 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
15 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
16 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
17 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
18 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
19 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
20 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1


Gene co-expression network
sample Sobic008G021100 Sobic008G021100 Sobic001G058900 Sobic001G058900 Sobic008G021100--Sobic001G058900 Sobic002G115000 Sobic002G115000 Sobic008G021100--Sobic002G115000 Sobic006G221200 Sobic006G221200 Sobic008G021100--Sobic006G221200 Sobic002G049300 Sobic002G049300 Sobic008G021100--Sobic002G049300 Sobic008G135000 Sobic008G135000 Sobic008G021100--Sobic008G135000 Sobic009G233400 Sobic009G233400 Sobic008G021100--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic008G021100--Sobic001G085400 Sobic001G510800 Sobic001G510800 Sobic008G021100--Sobic001G510800 Sobic001G334300 Sobic001G334300 Sobic008G021100--Sobic001G334300 Sobic001G058900--Sobic008G135000 Sobic002G304900 Sobic002G304900 Sobic001G058900--Sobic002G304900 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic002G115000--Sobic001G085400 Sobic007G019000 Sobic007G019000 Sobic002G115000--Sobic007G019000 Sobic002G115000--Sobic001G058900 Sobic002G115000--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic002G115000--Sobic002G047600 Sobic002G115000--Sobic003G249700 Sobic006G201500 Sobic006G201500 Sobic002G115000--Sobic006G201500 Sobic007G178600 Sobic007G178600 Sobic002G115000--Sobic007G178600 Sobic002G115000--Sobic002G049300 Sobic004G104100 Sobic004G104100 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic010G230700 Sobic010G230700 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic001G091801 Sobic001G091801 Sobic006G221200--Sobic001G091801 Sobic010G206200 Sobic010G206200 Sobic006G221200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic006G221200--Sobic005G019700 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic008G135000--Sobic001G058900 Sobic008G135000--Sobic009G233400 Sobic008G135000--Sobic002G304900 Sobic008G135000--Sobic002G115000 Sobic001G057300 Sobic001G057300 Sobic008G135000--Sobic001G057300 Sobic009G191200 Sobic009G191200 Sobic008G135000--Sobic009G191200 Sobic008G135000--Sobic001G334300 Sobic008G135000--Sobic001G085400 Sobic010G069400 Sobic010G069400 Sobic008G135000--Sobic010G069400 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic010G005300 Sobic010G005300 Sobic001G510800--Sobic010G005300 Sobic002G179300 Sobic002G179300 Sobic001G510800--Sobic002G179300 Sobic001G510800--Sobic001G058900 Sobic008G100000 Sobic008G100000 Sobic001G510800--Sobic008G100000 Sobic001G510800--Sobic008G108601 Sobic001G225700 Sobic001G225700 Sobic001G510800--Sobic001G225700 Sobic002G415500 Sobic002G415500 Sobic001G510800--Sobic002G415500 Sobic006G057200 Sobic006G057200 Sobic001G510800--Sobic006G057200 Sobic009G227400 Sobic009G227400 Sobic001G510800--Sobic009G227400 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic009G144300 Sobic009G144300 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic001G334300--Sobic002G049300
Octagon: transcription factors


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